KEGG   Rattus norvegicus (rat): 64202
Entry
64202             CDS       T01003                                 

Gene name
Calr
Definition
(RefSeq) calreticulin precursor
  KO
K08057  calreticulin
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04141  Protein processing in endoplasmic reticulum
rno04145  Phagosome
rno04612  Antigen processing and presentation
rno05142  Chagas disease
rno05163  Human cytomegalovirus infection
rno05166  Human T-cell leukemia virus 1 infection
rno05168  Herpes simplex virus 1 infection
rno05169  Epstein-Barr virus infection
rno05170  Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    64202 (Calr)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    64202 (Calr)
 09150 Organismal Systems
  09151 Immune system
   04612 Antigen processing and presentation
    64202 (Calr)
 09160 Human Diseases
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    64202 (Calr)
   05170 Human immunodeficiency virus 1 infection
    64202 (Calr)
   05168 Herpes simplex virus 1 infection
    64202 (Calr)
   05163 Human cytomegalovirus infection
    64202 (Calr)
   05169 Epstein-Barr virus infection
    64202 (Calr)
  09174 Infectious disease: parasitic
   05142 Chagas disease
    64202 (Calr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03110 Chaperones and folding catalysts [BR:rno03110]
    64202 (Calr)
  09183 Protein families: signaling and cellular processes
   04091 Lectins [BR:rno04091]
    64202 (Calr)
Chaperones and folding catalysts [BR:rno03110]
 Other chaperones and cochaperones
  Calnexin / calreticulin
   64202 (Calr)
Lectins [BR:rno04091]
 Calnexin / calreticulin
  64202 (Calr)
SSDB
Motif
Pfam: Calreticulin MDM10 DDHD Astro_capsid_p
Other DBs
NCBI-GeneID: 64202
NCBI-ProteinID: NP_071794
RGD: 620288
Ensembl: ENSRNOG00000003029
UniProt: P18418
Structure
PDB: 
1K9C 1K91 1HHN

Position
19
AA seq 416 aa
MLLSVPLLLGLLGLAAADPAIYFKEQFLDGDAWTNRWVESKHKSDFGKFVLSSGKFYGDQ
EKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPGGLDQK
DMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDN
TYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDKPE
HIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEYS
PDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDK
QDEEQRLKEEEEDKKRKEEEEAEDKEDEDDRDEDEDEEDEKEEDEEDATGQAKDEL
NT seq 1251 nt   +upstreamnt  +downstreamnt
atgctcctttcggtgccgctcctgcttggcctcctcggcctggctgccgcagaccctgcc
atctatttcaaagagcagttcttggacggagatgcctggaccaaccgctgggtcgaatcc
aaacataagtctgattttggcaaattcgtcctcagttctggcaaattctacggggaccag
gagaaggataaagggttgcagacaagccaagatgcccgattttacgcgctgtccgccaga
ttcgaacccttcagcaacaagggccagacactggtggtacagttcaccgtgaagcatgag
cagaatatcgactgtgggggcggctacgtgaagctgtttccgggtggcttggaccagaag
gacatgcatggagactcagaatataacatcatgtttggtccggacatctgcggtcctggc
accaagaaggttcatgtcatctttaactacaagggcaagaacgtgctgatcaacaaggat
atccggtgtaaggatgatgaattcacacatctatacacgctgattgtgcggccagacaac
acctacgaggtgaaaattgacaacagccaggtggagtcgggctccttggaggatgattgg
gactttctgccgcccaagaagattaaggatcctgacgctgccaagccagaagactgggat
gaacgagccaagattgatgaccccacagattccaagcctgaggactgggacaagccagag
cacatccctgaccctgatgctaagaagcctgaggactgggacgaagagatggatggagag
tgggaaccaccagtgattcaaaatcctgaatacaagggcgaatggaagccacgtcaaatt
gacaacccagattacaagggtacctggatacacccagagattgacaatcctgaatactcc
cccgatgcgaatatctatgcctatgatagttttgctgtactgggcttagacctctggcag
gtcaagtctggcacaatttttgacaacttcctcatcaccaatgatgaggcctatgcagag
gagtttggcaatgagacctggggtgtcaccaaggctgcagagaagcagatgaaggacaag
caggatgaggagcagaggcttaaggaagaagaagaagacaagaagcgtaaagaggaagag
gaggccgaggataaagaggatgaggatgacagagatgaagatgaagatgaagaggatgag
aaggaagaagatgaggaggatgccactggccaagccaaggatgagctgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (9)   
   KEGG PATHWAY (9)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (21)   
   RefSeq(nuc) (1)   
   GenBank (10)   
   EMBL (10)   
Protein domain (4)   
   Pfam (4)   
All databases (47)   

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KEGG   Rattus norvegicus (rat): 689537
Entry
689537            CDS       T01003                                 

Gene name
Calr4
Definition
(RefSeq) calreticulin isoform X1
  KO
K08057  calreticulin
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04141  Protein processing in endoplasmic reticulum
rno04145  Phagosome
rno04612  Antigen processing and presentation
rno05142  Chagas disease
rno05163  Human cytomegalovirus infection
rno05166  Human T-cell leukemia virus 1 infection
rno05168  Herpes simplex virus 1 infection
rno05169  Epstein-Barr virus infection
rno05170  Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    689537 (Calr4)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    689537 (Calr4)
 09150 Organismal Systems
  09151 Immune system
   04612 Antigen processing and presentation
    689537 (Calr4)
 09160 Human Diseases
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    689537 (Calr4)
   05170 Human immunodeficiency virus 1 infection
    689537 (Calr4)
   05168 Herpes simplex virus 1 infection
    689537 (Calr4)
   05163 Human cytomegalovirus infection
    689537 (Calr4)
   05169 Epstein-Barr virus infection
    689537 (Calr4)
  09174 Infectious disease: parasitic
   05142 Chagas disease
    689537 (Calr4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03110 Chaperones and folding catalysts [BR:rno03110]
    689537 (Calr4)
  09183 Protein families: signaling and cellular processes
   04091 Lectins [BR:rno04091]
    689537 (Calr4)
Chaperones and folding catalysts [BR:rno03110]
 Other chaperones and cochaperones
  Calnexin / calreticulin
   689537 (Calr4)
Lectins [BR:rno04091]
 Calnexin / calreticulin
  689537 (Calr4)
SSDB
Motif
Pfam: Calreticulin
Other DBs
NCBI-GeneID: 689537
NCBI-ProteinID: XP_038967098
RGD: 1591090
Ensembl: ENSRNOG00000037710
Position
5
AA seq 444 aa
MLRLGKNRPGQMPEPKGPGPAGLSRAQVQTDGEDVSGGCRDGWTKRWVQSKHQSDYGKFR
LDSGKFYQDKERDKGLQTTEDAKFYALSARFKPFSNENETLVVQFSVKHEQGIDCGGGYV
KLFPATLNQEDMHSESQYYIMFGPDICGFGNNRLQVILYHRGKYHENNKTLKCRINKDTH
LYTLILRPNATYEVKIDNEKVTGGELEADWDFLPPKKIKDPYARKPRKWDERLQIEDPED
KKPEDWQDSEFIPDPDAKKPDDWNEAMDGVWEGPLIPNVKYKGEWKPRIIDNPNYQGEWI
HPEIDNPKYRPDPTICHYHNISVLGLDLWQVKSGSIFDNFLLTNDEEFAEEVGNMTWGLR
KDVEQQWRELYEEMEKQKEAEEAKKKREKQRAKQEDIWGLDEEDEEENEEDAEEEAEERP
KQEGSGERASVDQKEAHFEQKDEL
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgctgaggctggggaagaatcgccctggacagatgcccgaaccaaagggacctggtcca
gctggcctttccagagctcaagtacaaactgatggcgaggatgtctctggaggctgcagg
gatggatggacaaaacggtgggtgcaatctaaacatcagtcagattacggtaaattccgg
cttgattcaggaaaattttatcaagataaagagagagataaaggtctccagaccacagaa
gatgccaagttctatgccctttccgccaggtttaagccattcagcaatgagaatgagacc
ttggtggttcagttttcagtaaaacatgagcagggcatcgattgcggcggtgggtatgtg
aaactctttcctgccacgctgaaccaggaggatatgcactcagaatcccagtattacatc
atgttcggcccagacatctgtggctttggcaacaacagactacaggtcatcctttatcac
cgagggaaataccatgagaacaacaagaccctcaagtgcaggattaataaagacactcac
ttgtacacactgatccttcgccctaatgctacttacgaggttaaaattgacaatgagaag
gtgacaggaggagaactggaagctgactgggacttcttgcctcccaagaaaataaaagat
ccctacgccaggaaaccgaggaaatgggacgaacggctacagatagaggatcctgaagat
aagaaacctgaggactggcaggactctgaattcatcccagaccctgatgccaagaagccg
gatgactggaatgaggcaatggatggggtgtgggaagggcccctgataccaaatgtcaag
tacaagggagaatggaagcctcggatcattgacaatcccaattaccagggggagtggatt
cacccagagatagacaaccccaaatacaggcctgaccccaccatttgtcactaccataat
atcagcgtccttggcctggatctttggcaggtgaaatcaggcagcatctttgacaatttc
cttctaacaaatgatgaagaatttgctgaagaggttggaaatatgacctggggattaaga
aaggatgtggagcagcagtggagagagctgtatgaagaaatggagaaacagaaggaggcg
gaagaggccaagaagaaaagggaaaagcagcgagccaagcaagaagacatctggggacta
gatgaggaggatgaggaggaaaatgaagaggacgctgaggaggaagcagaggaaaggccc
aagcaggaaggcagcggcgagagggcatcagtggatcaaaaggaagcccattttgagcag
aaggatgaactgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (9)   
   KEGG PATHWAY (9)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (1)   
   Pfam (1)   
All databases (46)   

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