KEGG   Rattus norvegicus (rat): 66031
Entry
66031             CDS       T01003                                 
Symbol
Wdr7
Name
(RefSeq) WD repeat-containing protein 7 isoform 1
  KO
K24738  rabconnectin-3b
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04142  Lysosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome
    66031 (Wdr7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    66031 (Wdr7)
Membrane trafficking [BR:rno04131]
 Endosome - Lysosome transport
  Acidification regulators
   Rabconnectin-3 complex
    66031 (Wdr7)
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd EIF3I Beta-prop_EML WDR55 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 WDR90_beta-prop_4th Beta-prop_SCAP WDR72_alpha-sol Beta-prop_WDR19_1st Beta-prop_DCAF12 PEP5_VPS11_N Beta-prop_Vps41 Beta-prop_LRRK2 Beta-prop_RSE1_2nd Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 66031
NCBI-ProteinID: NP_076465
RGD: 619836
Ensembl: ENSRNOG00000018387
UniProt: Q9ERH3 A6IXM9
Position
18:59435733..59718800
AA seq 1488 aa
MAGNSLVLPIVLWGRKAPTHCISSILLTDDGGTIVTGCHDGQICLWDLSEELEVNPRALL
FGHTAAITCLSKACASGDKQYTVSASANGEMCLWDVNDGRCIEFTKLACTHTGIQFYQFS
VGNQREGRLLCHGHYPEILVVDATSLEVLYSLVSKISPDWISSMSIIRSHRTQEDTVVAL
SVTGILKVWIVTSEISGLQDTEPIFEEESKPIYCQNCQSLSFCAFTQRSLLVVCSKYWRV
FDAGDYSLLCSGPSEDGQTWTGGDFVSADKVIIWTENGQSYIYKLPASCLPASDSFRSDV
GKAVENLIPPVQHSLLDQKDRELVICPPVTRFFYGCKEYLHKLLIQGDSSGRLSIWNIAD
IADKQEANEGLKTTTCISLQDAFDKLKPCPAGIIDQLSVIPNSNEPLKVTASVYIPAHGR
LVCGREDGSIIIVPATQTAIVQLLQGEHMLRRGWPPHRTLRGHRNKVTCLLYPHQVSARY
DQRYLISGGVDFSVIIWDIFSGEMKHIFCVHGGEITQLLVPPENCSARVQHCVCSVASDH
SVGLLSLREKKCIMLASRHLFPIQVIKWRPSDDYLVVGCTDGSVCVWQMDTGALDRCAMG
ITAVEILNACDEAVPAAVDSLSHPAVNLKQAMTRRSLAALKNMAHHKLQTLATNLLASEA
SDKGNLPKYSHNSLMVQAIKTNLTDPDIHVLFFDVEALIIQLLTEEASRPNTALISPENL
QKASGSSDKGGSFLTGKRAAVLFQQVKETIKENIKEHLLDEEEDEEEVMRQRREESDPEY
RASKSKPLTLLEYNLTMDTAKLFMSCLHAWGLNEVLDEVCLDRLGMLKPHCTVSFGLLSR
GGHMSLMLPGYNQAAGKLLQAKAEAGRKGPATESVGKGTYTVSRAVTTQHLLSIISLANT
LMSMTNATFIGDHMKKGPTRPPRPGTPDLSKARDSPPASSNIVQGQIKQAAAPVSARSAA
DHSGSASASPALRTCFLVNEGWSQLAAMHCVMLPDLLGLGKFRPPLLEMLARRWQDRCLE
VREAAQALLLAELRRIEQAGRKETIDTWAPYLPQYMDHVISPGVTAEAMQTMAAAPDASG
PEAKVQEEEHDLVDDDITTGCLSSVPQMKKMSTSYEERRKQATAIVLLGVIGAEFGAEIE
PPKLLTRPRSSSQIPEGFGLTSGGSNYSLARHTCKALTFLLLQPPSPKLPPHSTIRRTAI
DLIGRGFTVWEPYMDVSAVLMGLLELCADAEKQLANITMGLPLSPAADSARSARHALSLI
ATARPPAFITTIAKEVHRHTALAANTQSQQSIHTTTLARAKGEILRVIEILIEKMPTDVV
DLLVEVMDIIMYCLEGSLVKKKGLQECFPAICRFYMVSYYERSHRIAVGARHGSVALYDI
RTGKCQTIHGHKGPITAVSFAPDGRYLATYSNTDSHISFWQMNTSLLGSIGMLNSAPQLR
CIKTYQVPPVQPASPGSHNALRLARLIWTSNRNVILMAHDGKEHRFMV
NT seq 4467 nt   +upstreamnt  +downstreamnt
atggcaggaaacagtctagttctgcccattgttctctggggccgcaaagcacccacacac
tgtatttcgtcaatactgctgacagatgatgggggcacgattgtgactggatgccacgat
ggacagatatgtctctgggatctctcagaagagctggaagttaatccccgagcactatta
tttggtcacacagcagccatcacttgtttgtcaaaagcctgtgcttctggagacaaacag
tacaccgtgagtgcgtccgcaaatggagagatgtgcctctgggatgtgaatgacggcaga
tgtattgaatttacaaaattagcctgcacacatactggcatacagttctaccagttctct
gttggaaatcagcgagagggaaggcttctgtgccatgggcattaccctgaaatcctcgtt
gtggatgccaccagccttgaggtgttgtattctttggtatcaaagatatcaccagactgg
attagctccatgagtattatccgctctcaccggacacaagaggacactgtggtagcgctg
tccgtgacaggtattctgaaggtgtggattgtgacctctgaaattagtggattgcaggac
actgagccaatatttgaggaggaatccaaaccaatttattgtcagaattgccaaagcctc
tctttttgtgcattcacacagaggtcgctcttggttgtatgctccaagtactggagggtg
ttcgatgctggcgactactccctgctgtgttcaggtcctagtgaagatggacagacatgg
actggaggggactttgtgtctgcagacaaagtcattatttggactgaaaacgggcagagt
tacatttacaaactccctgccagttgccttccagctagtgattcattccgcagtgacgtg
gggaaagcagttgaaaatctgattcctcccgtgcagcatagcctcttggatcagaaggat
agagagttggtaatttgtcctcctgttactcggtttttctatggatgcaaggaatatttg
cataagctactaattcagggtgattcttctggaaggttaagtatttggaacatagcagac
atagcagacaaacaggaagccaatgaagggctaaaaacgacaacttgtattagtttgcaa
gatgcatttgacaaactgaagccttgtcctgctggaattatcgatcagctgagtgtgatt
ccaaacagcaacgaaccacttaaagtaactgcgagtgtctacataccagcacacgggcgc
cttgtttgcggccgggaagacggaagcatcattattgtccctgccacccagacggccata
gttcagctgctgcagggagaacacatgctcagacgaggttggcccccgcacagaaccctc
cgtggccaccggaacaaagtcacatgtttgctgtatcctcatcaggtctcagctcggtat
gatcaaagatacctgatatccggaggtgtggatttttccgtcatcatttgggacattttt
tccggagaaatgaaacatatcttctgtgttcatggtggtgagatcacacaacttctggtc
ccgccagaaaactgtagtgcaagagttcaacactgcgtctgttctgtggccagtgaccac
tctgtagggctgctaagtctgcgagagaaaaaatgcatcatgctggcgtctcgtcacctg
ttccctattcaggtgatcaagtggaggccttctgacgactacctggtggtggggtgcacg
gacggctctgtgtgtgtctggcagatggacactggtgcgctggaccgctgtgcaatgggg
ataacagccgtggagattctcaatgcttgtgacgaagctgtccctgcagcagtggactca
ctcagtcacccagcagtcaacctgaagcaagccatgacacggcggagtctcgccgccctt
aaaaacatggcccaccacaagctgcaaacccttgcaactaaccttttggcttctgaggcc
tctgacaaggggaatttacctaaatattctcataactccctgatggttcaagcaataaag
acaaacctaacagacccggatatccatgtgcttttctttgatgtggaagctttgattatt
caactcctgactgaagaagcctctaggccgaatactgcacttatttccccagagaatctg
cagaaagcatctggcagttcagacaaagggggctctttcctgactggaaaacgagcggca
gttcttttccagcaagtgaaagaaactatcaaagagaacataaaggagcacctccttgat
gaggaggaggacgaggaagaggtgatgaggcagaggagggaagaaagtgaccctgagtac
cgggccagcaagtccaaaccacttaccctactagaatacaaccttactatggataccgca
aaattattcatgtcctgtctccacgcctggggtttgaatgaagttctggatgaagtttgc
ctcgatcgcctcggcatgctgaaaccacactgcacagtgtcctttggtctcctatccaga
ggaggtcatatgtccttgatgcttcctggttataatcaggctgctggaaagctactgcag
gcgaaagcagaagcaggacggaaggggccagcaacggagagcgtaggcaaggggacctac
acagtgtcccgagcggtcaccacgcaacatctgttgtccatcatatctctggcaaatact
ttaatgagcatgaccaatgcgacgttcattggagatcacatgaagaagggccccaccagg
ccgcctagaccaggcaccccagacctttctaaggcaagggattcccccccagcctccagt
aacattgtgcaaggacagattaaacaagctgctgcgcctgtctctgctcggtctgccgcc
gaccactctggctctgcctctgcctctcctgctttacgtacctgcttcttagtgaatgaa
ggatggagccaactagctgccatgcactgtgtcatgctgccggacctgctggggctgggt
aaattcaggcctcctcttctggagatgctagctcgaagatggcaagatcggtgcttggag
gtgagagaggctgcacaggcccttcttctagcagagctgagaagaattgagcaggcagga
cggaaggagactattgatacctgggctccttacttacctcagtacatggaccatgtcata
tcacctggagtcacggcggaagccatgcagactatggcagctgctccagatgcctcgggg
ccagaagccaaagtccaggaagaagagcatgacctcgtggacgatgacatcaccactggt
tgcttatcaagtgtcccacaaatgaaaaagatgtccacatcttacgaagaaagaaggaag
caggccactgctattgttctcctgggagtgataggagcagagtttggagctgaaattgaa
ccaccaaaactgctgaccagacctcggagctctagtcaaattcctgaaggatttggtttg
acaagtggaggttccaactactctctggccagacatacgtgcaaggcactgacatttctt
ctgctacagccaccaagtcccaaacttcctcctcatagcaccatccggagaactgccatt
gacctgatcgggcgagggttcaccgtgtgggagccttacatggacgtgtctgctgtcctg
atggggctgctggagctgtgtgcagatgctgagaagcagctggccaacatcacaatgggg
ctgcctctgagccctgcagctgactctgcccgatccgcaagacacgccctttctctcata
gccaccgccagaccacccgccttcatcaccaccatagctaaggaggtgcacagacacacg
gcccttgcagcaaatacccagtcccagcagagtatccacaccaccacactggcaagggct
aaaggcgaaatcctgagagtcattgaaattcttatcgaaaagatgcctacggatgttgtg
gatcttcttgtggaggtcatggacatcatcatgtactgcctggaaggatctttagttaag
aagaagggtcttcaggagtgtttcccagccatctgcaggttctacatggtcagctattat
gagcggagtcacagaattgcagttggagcacgccatggctcagtggccctgtatgacatc
cggactgggaaatgtcagacaatccacggacacaagggacctatcactgcagtgtccttt
gctcctgatgggcgttaccttgccacctactcaaacactgacagccacatttctttctgg
cagatgaacacctcacttctgggaagcattggcatgctgaactcagcacctcagctgcgc
tgcatcaagacctaccaggtacctccagtgcagcccgcatcccctggctcgcacaacgcc
ctcaggttggcccggctcatctggacttccaaccggaatgttatcctcatggcccacgat
gggaaggagcaccgcttcatggtctga

  All links  
Gene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (8)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (9)   
   RefSeq(nuc) (5)   
   GenBank (2)   
   EMBL (2)   
Protein domain (27)   
   Pfam (27)   
All databases (49)   

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