KEGG   Rattus norvegicus (rat): 688288
Entry
688288            CDS       T01003                                 

Gene name
Eif4a3, eIF4A-III
Definition
(RefSeq) eukaryotic translation initiation factor 4A3
  KO
K13025  ATP-dependent RNA helicase [EC:3.6.4.13]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03013  RNA transport
rno03015  mRNA surveillance pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    688288 (Eif4a3)
  09122 Translation
   03013 RNA transport
    688288 (Eif4a3)
   03015 mRNA surveillance pathway
    688288 (Eif4a3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    688288 (Eif4a3)
   03041 Spliceosome [BR:rno03041]
    688288 (Eif4a3)
   03009 Ribosome biogenesis [BR:rno03009]
    688288 (Eif4a3)
   03012 Translation factors [BR:rno03012]
    688288 (Eif4a3)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     688288 (Eif4a3)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     688288 (Eif4a3)
   mRNA cycle factors
    Stress granule specific factors
     688288 (Eif4a3)
Spliceosome [BR:rno03041]
 Complex C
  Other components
   EJC/TREX
    688288 (Eif4a3)
Ribosome biogenesis [BR:rno03009]
 Eukaryotic type
  90S particles
   Helicases
    688288 (Eif4a3)
Translation factors [BR:rno03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    688288 (Eif4a3)
SSDB
Motif
Pfam: DEAD Helicase_C AAA_19 ResIII AAA_30 AAA_22 Flavi_DEAD
Other DBs
NCBI-GeneID: 688288
NCBI-ProteinID: NP_001093628
RGD: 1591139
Ensembl: ENSRNOG00000045791
UniProt: Q3B8Q2
Position
10q32.3
AA seq 411 aa
MAATATMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEK
PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV
QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRA
IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRIL
VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA
NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL
YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq 1236 nt   +upstreamnt  +downstreamnt
atggcggccacggccacgatggcgacgtcgggctccgcgcggaagcggctgctcaaagag
gaggacatgaccaaagtggagttcgagaccagcgaggaggtggacgtgacccccacgttc
gacaccatgggccttcgggaggacctgctgcgcggcatctacgcctacggttttgaaaaa
ccttctgcgatccaacagcgtgctatcaagcagataattaaagggagagatgtcattgca
cagtctcagtctggcacaggcaagacggccaccttcagtatttcagtccttcagtgcttg
gatatccaggttcgagaaacccaagctttgatattggctccaacaagagagttagcagtg
cagattcagaagggtctgcttgctttgggggattacatgaacgtgcagtgccatgcctgc
attggtggcaccaatgtcggggaggacatccggaagctggactatgggcagcatgttgtg
gcgggcacaccaggacgagtctttgatatgatccgccgtagaagtttaaggacacgggca
atcaagatgttggttttggatgaagctgatgaaatgttgaacaaaggtttcaaggagcag
atctatgacgtgtacaggtacttgccaccagccactcaggttgttctcatcagcgccacg
ctgccccatgagatcctggagatgaccaacaagttcatgaccgaccccatccgcatcttg
gtgaagcgtgatgagttgactctggaaggcatcaaacagttcttcgtggccgtggaaaga
gaggaatggaagttcgacactctctgtgatctctacgacacgctgaccatcacccaggct
gtcatcttctgcaacaccaagaggaaggttgactggctgacagagaaaatgagagaagcc
aatttcacagtgtcgtccatgcacggagacatgccccagaaagagcgtgagtccatcatg
aaggagttccggtcaggtgccagccgagtgctcatctccacagatgtctgggcgcggggc
ctcgatgtccctcaggtgtccctcatcattaactatgacctgcccaacaacagagaactg
tacattcacagaatcgggagatcaggtcgatatggacgcaaaggtgtggccatcaatttt
gtgaagaatgatgacatccgcatcctcagggacattgagcagtactactccacccagata
gatgagatgcctatgaatgtggctgacctcatctga

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (7)   
   Pfam (7)   
All databases (34)   

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