KEGG   Rattus norvegicus (rat): 84580
Entry
84580             CDS       T01003                                 
Symbol
Hdac5
Name
(RefSeq) histone deacetylase 5
  KO
K11406  histone deacetylase 4/5 [EC:3.5.1.98]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04371  Apelin signaling pathway
rno04613  Neutrophil extracellular trap formation
rno05034  Alcoholism
rno05203  Viral carcinogenesis
rno05206  MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04371 Apelin signaling pathway
    84580 (Hdac5)
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    84580 (Hdac5)
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    84580 (Hdac5)
   05203 Viral carcinogenesis
    84580 (Hdac5)
  09165 Substance dependence
   05034 Alcoholism
    84580 (Hdac5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    84580 (Hdac5)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     84580 (Hdac5)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     84580 (Hdac5)
SSDB
Motif
Pfam: Hist_deacetyl HDAC4_Gln
Other DBs
NCBI-GeneID: 84580
NCBI-ProteinID: NP_445902
RGD: 619980
Ensembl: ENSRNOG00000020905
UniProt: A6HJH3
Position
10:complement(87653139..87688078)
AA seq 1113 aa
MNSPNESDGMSGREPSLEILPRTPLHSIPVAVEVKPVLPAAMPSSMGGGGGGSPSPVELR
GALAGPMDPALREQQLQQELLVLKQQQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQ
QEMLAAKRQQELEQQRQREQQRQEELEKQRLEQQLLILRNKEKSKESAIASTEVKLRLQE
FLLSKSKEPTPGGLNHSLPQHPKCWGAHHASLDQSSPPQSGPPGTPPSYKLPLLGPYDSR
DDFPLRKTASEPNLKVRSRLKQKVAERRSSPLLRRKDGTVISTFKKRAVEITGTGPGVSS
VCNSAPGSGPSSPNSSHSTIAENGFTGSVPNIPTEMLPQHRALPLDSSPNQFSLYTSPSL
PNISLGLQATVTVTNSHLTASPKLSTQQEAERQALQSLRQGSTLTGKFMSTSSIPGCLLG
VALEGDTSPHGHASLLQHVLLLEQARQQSTLIAVPLHGQSPLVTGERVATSMRTVGKLPR
HRPLSRTQSSPLPQSPQALQQLVMQQQHQQFLEKQKQQQMQLGKILTKTGELSRQPTTHP
EETEEELTEQQEALLGEGALTMPREGSTESESTQEDLEEEEDEEEDEEDCIQVKDEDGES
GPDEGADLEESSAGYKKLFADAQQLQPLQVYQAPLSLATVPHQALGRTQSSPAAPGSMKS
PTDHPTVVKHLFTTGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCER
IRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSD
TVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVA
ITAKLLQQKLSVGKVLIVDWDIHHGNGTQQAFYDDPSVLYISLHRYDNGNFFPGSGAPEE
VGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGH
LSPLGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQP
LDEAVLQQKPSVNAVATLEKVIEIQSKHWSCVQRFATGLGCSLREAQTGEKEEAETVSAM
ALLSMGAEQAQAAATQEHSPRPAEEPMEQEPAL
NT seq 3342 nt   +upstreamnt  +downstreamnt
atgaactctcccaacgagtcggatggcatgtcaggccgggaaccatccttggaaatcttg
ccacggactcctctgcacagcatccctgtggcagtggaggtgaagccggtgctgccagca
gccatgcccagctccatgggaggtggaggtggaggtagccccagccctgtggagcttcgg
ggggctctggcaggccccatggaccccgcgcttcgggagcagcaactgcagcaagagctc
ctggtgctcaagcagcagcagcagctgcaaaagcagctcctgtttgccgagtttcagaag
cagcacgaccacctgacgcggcagcatgaagtccagctgcagaagcacctcaagcagcag
caggagatgctggcggctaagaggcagcaggagctggagcagcagcggcagcgcgagcag
cagcggcaagaggagctagagaaacagcggctggagcagcagctgcttattctacgaaac
aaggagaagagcaaagagagtgccatcgccagcaccgaggtaaagctgaggctccaggaa
ttcctgttgtccaagtcaaaggagcccacaccaggcggcctcaaccattccctcccacag
caccccaaatgctggggagcccatcatgcttctttggaccagagttcccctccccagagc
ggccctcctgggacgcctccctcctacaaattgcctttgcttgggccctatgacagccgt
gatgactttcccctccgtaaaacggcctcggaacccaacttaaaagtacgttcaaggcta
aaacagaaggtagctgagagaagaagcagtcccctcctgcgtcgaaaggatggcactgtt
attagtacttttaagaagagagcagtcgagatcacaggcacagggcctggggtgtcgtcc
gtgtgtaacagtgcgcctggctctggccccagctctcccaacagttcccacagcaccatc
gctgagaacggctttactggctcagtccccaacatccccactgagatgctcccccagcac
cgggccctccctctggacagttccccaaaccagttcagcctctacacgtctccttctctg
cctaacatctccctagggctgcaggccactgtcactgttaccaactcgcacctcaccgcc
tccccgaagctgtcgacacagcaggaggctgagaggcaggcccttcagtccctgcggcag
ggcagcacactgaccggcaagttcatgagcacatcctccatccctggctgcctgctggga
gtggccctggagggcgacacgagcccccatgggcacgcttccctgctgcagcacgttttg
ctgctggagcaggcccggcaacagagcacgctcatagcggtgccactccatgggcagtcc
ccactggtgacgggtgaacgtgtggccaccagcatgaggacagtgggcaagctcccaagg
caccgacctctgagccgtactcagtcctcgcccctgccgcagagtccccaggccctgcag
cagctggttatgcagcagcagcaccagcagttcctagagaaacagaagcagcagcagatg
cagctgggcaagatccttaccaaaactggggagctgtcaaggcagcccaccacccaccct
gaagagacagaggaggagctgacggaacagcaggaggccttgctgggggagggggccctg
accatgccccgggaaggttctacagagagcgagagcacccaggaagatctagaagaggaa
gaggatgaggaggaggacgaggaggactgcattcaggtcaaggatgaggatggcgagagt
ggtcctgatgagggcgcagacttggaggagtccagtgctggttacaaaaagttgttcgca
gatgcccagcagttacagcccctccaggtataccaggcacccctcagcctggccactgtg
cctcatcaggccctgggccgcacccagtcctcacctgctgctcctgggagcatgaagagc
cccacagaccaccccactgtggtgaagcacctcttcaccacaggtgtggtctatgacacg
ttcatgctgaagcatcagtgtatgtgcggaaacacacatgtgcacccagagcacgccggc
cgcatccagagcatctggtcccggctgcaggaaactggtctgctcagcaagtgtgagcgg
atccggggtcgtaaagccacactggatgaaatccagaccgtgcactctgagtaccacacc
ctgctctatgggaccagtccccttaaccggcagaagctggacagtaagaagctgcttggc
cccatcagccagaagatgtacgccatgctgccttgtgggggcattggggtggacagtgac
actgtgtggaatgagatgcactcctctagtgccgtgcgaatggcagtgggctgcctggtg
gagctggccttcaaggtggctgcaggagagctcaagaatggatttgccatcatccgaccc
ccaggacatcatgctgaggagtccacagccatgggattctgcttcttcaactccgtagcc
atcacagctaaactcctgcagcagaagctgagcgtgggcaaggtcctcatcgtggactgg
gacattcaccacggcaatggcacccagcaagcattttacgatgacccctccgtgctctac
atctctttgcatcgctacgacaatgggaacttctttccaggctccggggctcctgaagag
gttggtggagggccaggtgtggggtacaacgtaaatgtggcgtggacaggaggtgtggat
ccccccattggagatgtggaatacctgacagccttcaggacagtagtgatgcccattgcc
cacgagttctcacccgacgtcgttctagtctccgctgggtttgatgctgttgaaggacat
ctgtctccactgggtggctattctgtcaccgccagatgttttggccacttgaccaggcag
ctcatgacactggcagggggccgggtggtgctggccctggagggaggtcatgacttgacc
gccatctgtgatgcttctgaggcctgtgtctcggctctgctcagcgtggagctgcagccc
ttggatgaagcagtcttgcagcaaaagcccagcgtcaatgcagttgccacactagagaaa
gtcatcgagatccagagcaaacactggagctgtgtacagaggtttgccactggtctgggc
tgctcgctgcgggaggctcagacgggtgagaaagaggaggccgagactgtgagcgccatg
gccctgctttccatgggggctgagcaggcccaggctgctgccactcaagagcacagcccc
cggccagccgaggagcccatggagcaggagcctgccctgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (10)   
   UniProt (1)   
   RefSeq(pep) (9)   
DNA sequence (15)   
   RefSeq(nuc) (9)   
   GenBank (3)   
   EMBL (3)   
Protein domain (2)   
   Pfam (2)   
All databases (43)   

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