KEGG   Romboutsia sp. CE17: HF520_13710
Entry
HF520_13710       CDS       T06535                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
roc  Romboutsia sp. CE17
Pathway
roc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:roc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HF520_13710 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:roc03021]
    HF520_13710 (rpoB)
   03400 DNA repair and recombination proteins [BR:roc03400]
    HF520_13710 (rpoB)
Enzymes [BR:roc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HF520_13710 (rpoB)
Transcription machinery [BR:roc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HF520_13710 (rpoB)
DNA repair and recombination proteins [BR:roc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HF520_13710 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 DUF5887
Other DBs
NCBI-ProteinID: QJA09860
UniProt: A0A6H1X3D9
Position
2826175..2829882
AA seq 1235 aa
MPHPVTIGKRTRMSFSKIKEIADLPNLIELQVDSYKWFLEEGLKEVFEDISPIEDYTGNL
ILEFVDYSLDDKPKYDIEECKERDATYCAPLKVKVRLINKETGEIKEQEVFMGDFPLMTE
RGTFVINGAERVIVSQLVRSPGVYYAEERDKTGKRLISSTVIPNRGAWLEYETDSNDVIS
VRVDRTRKQPVTVLLRALGIGTDAEIIDLLGEDERLSATLEKDNTKTVEEGLVEIYKKLR
PGEPPTVESASSLLNALFFDPKRYDLAKVGRYKFNKKLALCYRIMNKISADDIINPETGE
VFVKAGDRISYDTAKAIQNSGINVVNILSDEDTTVKVIGNNFVDIKAHIDFNIDELNIKE
KVHYPTLKEILDEYSDEEEIKEALRIRMKELIPKHILLDDIIASISYEFNLFYEIGNIDD
IDHLGNRRIRSVGELLQNQVRIGLSRMERVIKERMTVQDMESITPQALVNIRPVSAAIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLGTYAKINEYGFIESPYRKYDKETGKITNEIHYLTADEEDLFVRAQANEP
LTENGEFVNSRVVCRTVNGAVELVPANRVDYMDISPKQVVSIATAMIPFLENDDANRALM
GSNMQRQAVPLVRREAPIIGTGVEYRAAKDSGAVVVAKNSGIAERVTADEIIIRKEDGSK
DRYKLLKFKRSNSGTCINQTPIINKNDVIQAGDVIADGPATDLGEVALGRNCFIAFMTWE
GYNYEDAILINERLVKEDRLSTIHIEEYECEARDTKLGPEEITRDIPNVSESAIKNLDDR
GIIRIGAEVDSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGII
VDVKVFTRENGDDLSPGVNELVRCYIAKKRKIKVGDKMAGRHGNKGVISRVLPEEDMPFM
ADGTPLDIVLNPQGVPSRMNIGQVLEVHLGLAAKALGWHVATSVFDGANEYDIMDALEEA
GYPRDGKLTLYDGRTGETFDNRITVGYMYMLKLHHLVDDKLHARSTGPYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAHILQEILTVKSDDVVGRVRTYEAIVKGENIPEPGIPES
FKVLIKELQSLCLDVKVLTDEDKEIEVRESIDVDDTDGNFETSLIDDMQEVEDTHIIEEI
DDELVDETDADIDDLDLEEDMDYVDLDYENEDFDI
NT seq 3708 nt   +upstreamnt  +downstreamnt
atgccacatcctgtcacgataggtaaaagaactagaatgagcttttctaagataaaagaa
atagctgatttaccaaatcttatagaattacaagtggattcttataagtggtttttagaa
gaagggttaaaggaagtatttgaagatatttccccaatagaagattatacaggtaatctt
atattagaatttgttgactactctttagatgataagccgaaatacgatatagaagagtgt
aaagaaagagatgctacatactgtgcgcctctaaaagttaaagtaagacttataaataaa
gaaactggggaaataaaagaacaagaagtatttatgggcgacttcccacttatgactgaa
agaggaactttcgtaataaacggtgcggaaagagttatagtaagtcagttagttagatct
ccaggggtttattatgctgaagaaagagataaaactggtaagagattaatatcttctact
gttatcccaaatagaggagcatggttagaatatgaaacagactctaatgatgttatatct
gtaagagtagatagaactagaaaacaaccagttactgttttattaagagcattaggtata
ggtactgatgcagaaataatagatcttttaggtgaagatgaaagattaagtgctacttta
gaaaaagacaatactaaaactgttgaagagggattagtagaaatatacaaaaagttaaga
ccaggcgaaccgcctactgttgaaagtgcttcatcattattaaatgctttattctttgat
ccaaagagatatgatttagctaaagtaggtagatacaagtttaataagaaacttgcatta
tgctacagaataatgaataagatttcagctgatgatataataaatcctgaaactggagaa
gtatttgttaaggctggagatagaatatcttatgatacagctaaagctatacaaaactca
ggtataaacgttgtgaatatactttcagatgaagatactacagttaaagttatagggaat
aactttgtagatattaaagctcacattgattttaatatagatgaattaaatataaaagaa
aaagttcactatccaacattaaaagaaatactagatgaatatagtgacgaagaagaaata
aaagaagcattaagaataagaatgaaagaacttataccaaagcatatattactagatgat
ataatagcttctataagttatgaattcaacttattctatgaaataggtaacatagatgat
atagatcatctaggtaacagaagaataagatcagttggagaattacttcaaaaccaagtt
agaataggtctttctagaatggaaagagttataaaagaaagaatgactgttcaagatatg
gaatcaataactccacaagcattagtaaacataagacctgtttctgctgctataaaagag
ttctttggtagttctcagttatctcagttcatggatcaaactaacccattatctgagtta
acacacaaaagaagattatctgcgttaggaccaggaggtctttcgagagaaagagctgga
ttcgaagtgcgtgacgttcatcactcacactacggaagaatgtgtccgatagagactcca
gaaggaccaaacatcggtcttataaactcattaggtacttatgcaaagataaatgaatat
ggatttatcgagtctccttatagaaagtatgataaggaaacaggtaaaataacaaatgaa
atacactatttaactgcagatgaagaagatttattcgtaagagctcaagcgaatgaacca
ttaactgaaaatggtgagttcgtaaatagcagagtagtttgtagaactgtaaatggtgca
gttgagctagttcctgcaaatagagttgattacatggatatatctcctaagcaagttgtt
tctatagctacagctatgataccattcttagaaaatgacgatgccaaccgtgctctaatg
ggatcaaacatgcaacgtcaagctgtgcctctagtaagaagagaagcaccgatcattggt
acaggagtagaatatagagctgctaaagactctggagctgttgtagttgctaaaaactca
ggtatagcagaaagagttactgcagatgaaataataataagaaaagaagatggaagtaag
gatagatataaattacttaaattcaaacgttcaaactcaggtacttgtataaatcaaact
cctataattaataagaatgatgtaatacaagcaggagatgttatagcggatggaccagct
acagacttaggagaagtagcattaggtagaaactgttttatagcattcatgacttgggaa
ggttacaactacgaggatgccatcttaataaatgaaagactagttaaagaagatagatta
tctacaattcatatagaagaatatgaatgtgaagcgagagatactaagctaggaccagaa
gaaataactagagatataccaaacgtatctgaaagtgcaataaagaacttagatgataga
ggtataataagaataggtgcagaagtagattcaggagatatattagttggtaaggtaact
ccaaaaggagaaactgaacttactgctgaagaaagattacttcgtgcaatcttcggagaa
aaagcaagagaagttagagatacttcgcttaaagttcctcacggagaatctggtataatc
gttgacgtaaaagtattcactagagaaaatggagacgatttatctccaggtgttaatgaa
ttagttagatgttatatagctaagaagagaaaaataaaagttggagataagatggctgga
cgtcatggtaacaaaggggttatatctagagtattacctgaagaagacatgccgtttatg
gctgacggaactccacttgatatagttcttaaccctcaaggggtaccatcacgtatgaac
atcggtcaggtacttgaagttcatttaggtcttgctgctaaagctttaggatggcatgta
gcaacatctgtatttgatggtgctaacgaatatgatataatggatgctcttgaagaggct
ggatatcctagggatggaaagttaacattatatgatggaagaacaggtgaaacatttgat
aatagaataactgtaggatacatgtacatgttaaaactacatcacttagttgatgataag
ttacatgcaagaagtacaggaccatactcactagtaactcaacaaccactaggtggtaaa
gcacaattcggtggacaaagatttggtgagatggaggtttgggcattagaagcatatggt
gcagctcacatacttcaagaaatacttacagttaagtctgatgacgttgtaggacgtgtt
agaacttatgaagcaatagttaagggtgaaaatatcccagaaccaggaattcctgaatca
ttcaaagttcttataaaagaacttcaaagtttatgtttagatgttaaggtattaactgat
gaagataaagaaatagaagtaagagaatctattgatgtagatgatacggatggaaacttt
gagacaagtcttatagacgatatgcaagaagtagaagatactcacataatagaagaaata
gatgatgaattagttgatgaaacagatgcagatatagatgatctagatcttgaggaagat
atggattatgttgatttagattatgaaaatgaagattttgatatatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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