KEGG   Rhodococcus opacus B4: ROP_65220
Entry
ROP_65220         CDS       T00882                                 
Symbol
ligA
Name
(GenBank) NAD(+)-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rop  Rhodococcus opacus B4
Pathway
rop03030  DNA replication
rop03410  Base excision repair
rop03420  Nucleotide excision repair
rop03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rop00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ROP_65220 (ligA)
   03410 Base excision repair
    ROP_65220 (ligA)
   03420 Nucleotide excision repair
    ROP_65220 (ligA)
   03430 Mismatch repair
    ROP_65220 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rop03032]
    ROP_65220 (ligA)
   03400 DNA repair and recombination proteins [BR:rop03400]
    ROP_65220 (ligA)
Enzymes [BR:rop01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     ROP_65220 (ligA)
DNA replication proteins [BR:rop03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     ROP_65220 (ligA)
DNA repair and recombination proteins [BR:rop03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     ROP_65220 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ROP_65220 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     ROP_65220 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      ROP_65220 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT HHH
Other DBs
NCBI-ProteinID: BAH54769
NITE: ROP_65220
UniProt: C1B1S4
Position
7134424..7136517
AA seq 697 aa
MVSESTEAPTPAPGSVREHWNELAEDVRQHQFRYYVRDAPIISDGEFDALLGELNDLENQ
YPDLRTPDSPTQLVGGGFATDFASADHLERMLSLDNVFATDELRTWISRVEQETGPDLHY
LCEVKIDGVALNLVYENGRLVRAATRGDGRTGEEVTLNARTIDDIPEKLTGTDKYPIPAL
LEVRGEVFFRLEDFAALNAALVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGL
GRSEGFEPASQYDAYTALAAWGLPVSTHTVRVTGADAVVDRVQYWGEHRHDVEHEIDGLV
VKVDETSLQRRLGSTSRAPRWAIAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVTV
AGSTVSLATLHNGSEVKRKGVLIGDTVVLRKAGDVIPEVLGPVVDARTGDEYEFVMPANC
PECDTPLAPAKEGDADIRCPNQQYCPAQLRERVFHVAGRGAFDIEVLGYEAATSLLEAKA
IGDEGDLFSLTEDDLLKTTLFRTKAGGLSANGRRLLDNLDSAKDKPLWRVLVALSIRHVG
PTAARALAGEFGSLDRIRESSVEELAAVDGVGGTIAAAVAEWFGVDWHRQIVDKWSAAGV
RMEDERDESIPRNLEGLSIVVTGSLETFSRDQAKEAILVRGGKAAGSVSKKTAFVVAGES
PGSKHDKAVELGVPVLDEDGFRRLLEGGPDAVTDSGV
NT seq 2094 nt   +upstreamnt  +downstreamnt
atggtgagtgaatcgaccgaagccccgacaccggcccccggatccgtccgggagcactgg
aacgagctggccgaggacgtgcggcagcaccagttccgctactacgtccgcgacgcgccc
atcatctccgacggagagttcgacgcgctgctgggcgagctgaacgacctcgagaaccag
taccccgacctgcggacgcccgattcgccgacccagctcgtcggcggcggattcgccacc
gacttcgcctccgccgatcacctcgagcggatgctgagcctcgacaacgtcttcgcgacc
gacgaactgcgcacctggatcagccgggtggagcaggagaccggccccgacctgcactac
ctgtgcgaggtgaagatcgacggggtcgcgctgaacctggtgtacgagaacggcagactc
gtccgcgccgccacccggggcgacggccggaccggcgaggaagtgacgctcaacgcccgg
accatcgacgacatcccggaaaagctcaccggcacagacaaatacccgattccggcgctc
ctcgaggtgcgcggcgaggtgttcttccggctcgaggacttcgcggcgctcaacgcggcg
ctcgtcgaggagggcaaggcgccgttcgcgaatccccggaactcggcggccgggtcgctg
cggcagaagaatccggccgtcacggcccgcaggcggctcgggatgatctgccacggcctg
ggccggagcgaaggattcgagccggcctcccagtacgacgcgtacacggcgctggcggcg
tggggcctgccggtgtccacccacaccgtccgcgtgacgggcgcggacgctgtcgtggac
agggtgcagtactggggcgagcaccggcacgacgtggagcacgagatcgacggcctggtg
gtcaaggtcgacgagacgtcgctgcaacgccggctgggttccacgtcgcgggcgccgcgc
tgggcgatcgcgtacaagtacccgccggaggaggccaccaccaaactcctcgacatccgg
gtcaacgtcggccgcaccggccgggtcaccccgttcgcctacatggagccggtcacggtc
gccggatccaccgtctccctcgccaccctgcacaacggctccgaggtcaagcgcaagggc
gtgctgatcggcgacacggtggtgctacgcaaggccggtgacgtgattcccgaggtactc
gggcccgtggtcgacgcccggaccggcgacgaatacgagttcgtgatgccggcgaactgc
ccggagtgcgacacgccgctcgctcccgccaaggagggtgacgcggacattcgctgcccc
aaccagcagtactgccccgcgcagctccgggaacgcgtgttccacgtcgcgggccgcggt
gcgttcgacatcgaggtgctcggctacgaggccgcgacgagcctgctcgaggcgaaggcg
atcggcgacgagggcgacctgttctcactcaccgaggacgacctgctgaagacgacgctc
ttccgaaccaaggccggcgggctgtcggccaacggccgcaggctgctcgacaacctcgat
tccgccaaggacaagcccttgtggcgggtgctggtcgccctgtcgatccgccacgtcggt
ccgacggcggcgcgtgcgctggccggtgagttcgggtcgctcgaccggatccgggagagc
tccgtcgaggaactcgcggcggtcgacggggtcggtggcaccatcgccgccgccgtcgcc
gagtggttcggcgtcgactggcaccggcagatcgtcgacaagtggtcggcggccggggtg
cgcatggaagacgaacgcgacgaatcgattccgcgcaacctcgagggcctgtcgatcgtc
gtcacgggttcgctcgagacgttctcccgcgaccaggcgaaggaggcgatcctcgtccgg
ggcggcaaggccgcgggttcggtgtcgaagaagacggcgttcgtggtggccggcgaatcc
ccggggtcgaagcacgacaaggccgtcgaactcggtgtgccggtcctcgacgaggacggg
ttccgccgactgctcgagggcggaccggacgcggtcacggattccggagtgtga

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