KEGG   Rahnella sikkimica: BV494_14605
Entry
BV494_14605       CDS       T05331                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
rox  Rahnella sikkimica
Pathway
rox02024  Quorum sensing
rox03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rox00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BV494_14605
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BV494_14605
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rox03019]
    BV494_14605
   03036 Chromosome and associated proteins [BR:rox03036]
    BV494_14605
Messenger RNA biogenesis [BR:rox03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BV494_14605
Chromosome and associated proteins [BR:rox03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BV494_14605
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AVF36085
UniProt: A0A2L1UT22
Position
complement(3172977..3173288)
AA seq 103 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNPGTGSTSSNYHHGSTPSAQQPQQENDDAE
NT seq 312 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttgcaagatccgttcctgaacgcattgcgtcgtgaacgtgtt
ccggtttctatttacttggtgaatggtattaagctgcaaggccagattgagtcttttgac
cagtttgtcattctgttaaaaaatacggtaagccagatggtgtataaacacgctatctcc
accgtagtgccttcccgcccggtgtcacatcatagcaataatccaggtacgggcagcacc
agcagcaattatcaccatggtagcaccccgtctgcgcagcagccgcagcaggaaaacgat
gacgctgaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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