KEGG   Rhizobium oryzihabitans: G3A56_09800
Entry
G3A56_09800       CDS       T06770                                 
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
roy  Rhizobium oryzihabitans
Pathway
roy02020  Two-component system
roy02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:roy00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    G3A56_09800 (rpoN)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    G3A56_09800 (rpoN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:roy03021]
    G3A56_09800 (rpoN)
Transcription machinery [BR:roy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     G3A56_09800 (rpoN)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR 2Fe-2S_thioredx Fe_dep_repress
Other DBs
NCBI-ProteinID: QIB38250
UniProt: A0A7L5BH75
Position
M15-11:1862333..1863883
AA seq 516 aa
MALSASLLLRQNQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVERNPLLEIAANDGDLGG
DSPADAENFGDADSEASDKSATVTADSDDWYGERAANLGEQLDTSFENVFPDDGEPRKAD
APELASQWKSMPGQESGESYDLDDFVAARQSLGDHLNQQLPLAISSPEDRMIADALIGQL
DETGYIATDAVDDVAERLGATPSAVQQVLKTLQGFDPPGVFSRSLSECLAIQLAQKDRLD
PAMRALVDNLELLAKRDFAALKKICGVDEEDLLDMLAEIRTLNPRPGAGYDSMVSETIVP
DIIVRPSSAGGWLVEINPETLPRVLINQTYFAEVSRHKARQGEDQDFLAECMQTAHWLTR
SLDQRARTIMKVATEIVRQQDAFLVNGVDHLRPLNLKTVADAIKMHESTVSRVTSKKYML
TPRGLFELKYFFSVSISSVEGGDSHSAEAVRHRIKGMIAQEAADAVLSDDDIVDNLKKSG
IDLARRTVAKYREAMNIPSSVQRRREKKAQARASAY
NT seq 1551 nt   +upstreamnt  +downstreamnt
atggcattatctgccagccttttgctgcgtcaaaaccagtctctcgtgatgacaccgcaa
ctgatgcagtccatccagctgcttcagatgacgcatttcgaactgacgcagtttatcgcg
caggaggttgaacgcaatccgctgctcgaaattgcggcaaacgatggcgatttgggcggc
gacagccctgcggatgcagagaatttcggcgatgccgacagcgaggcctccgacaaatcc
gcaacggtaacggccgatagcgacgactggtatggcgagcgcgccgccaatcttggcgaa
cagctcgataccagcttcgaaaacgtctttcccgacgatggcgaaccccgaaaggccgat
gcccccgagctggcaagccaatggaaatccatgcccgggcaggagtccggcgaaagttac
gatctcgacgatttcgttgccgcgagacaaagcctcggtgaccatctcaatcaacaattg
ccgcttgccatatcctccccggaggacaggatgatagccgatgcgctgatcggccagctc
gacgaaacaggatatatcgcgacggatgccgtcgatgatgtcgcggaacgactgggagct
actccttcggcagtgcagcaggttttgaagacccttcagggtttcgaccctccgggcgtg
ttttcccgttcgctgagcgagtgtctggcgatccagcttgcccagaaggaccgcctcgat
ccggccatgcgggcgcttgtcgacaatctggagctcctggccaaacgggatttcgcggcc
ctgaaaaaaatctgtggcgtcgatgaagaggaccttctcgacatgctggcggaaatccgc
acgctcaatccgcgcccaggtgccggctacgattcgatggtctcggagacaatcgtccct
gatatcatcgttcgcccctcatcagcaggcggctggcttgtcgagatcaatcccgagacc
ctgccccgcgtactcatcaaccagacctatttcgccgaggtctcgcgacacaaggcccgt
cagggtgaggatcaggattttctggctgagtgcatgcagacggcccactggctgacccgc
agcctcgaccagcgtgcccgcacaatcatgaaggtggccaccgaaatcgttcgccagcag
gacgcctttcttgtcaacggcgtggatcacctgcgaccgctgaacctcaagaccgtggcc
gacgccatcaagatgcatgaatccaccgtcagccgcgtgacgtcgaaaaaatacatgctg
acgccgcgcgggctgttcgagctgaaatatttcttcagcgtatcgatcagctccgtggaa
ggcggcgacagccattcggcggaggcggtgcgccaccgcatcaagggcatgatcgcgcag
gaggccgccgacgcggtgctttccgacgacgatatcgtcgacaatctgaaaaagagcggc
atcgatctcgcccgccgcaccgtcgccaaatatcgcgaggcgatgaacatcccctcctcc
gtgcagaggcgtcgggaaaagaaggcgcaggcaagagcttccgcctactga

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