KEGG   Rhodopseudomonas palustris HaA2: RPB_0393
Entry
RPB_0393          CDS       T00321                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
rpb  Rhodopseudomonas palustris HaA2
Pathway
rpb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rpb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RPB_0393
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rpb03021]
    RPB_0393
   03019 Messenger RNA biogenesis [BR:rpb03019]
    RPB_0393
Transcription machinery [BR:rpb03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     RPB_0393
Messenger RNA biogenesis [BR:rpb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RPB_0393
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT AAA Spore_III_AA
Other DBs
NCBI-ProteinID: ABD05104
UniProt: Q2J356
Position
complement(438366..439631)
AA seq 421 aa
MREMKLSDLKAKTPAELVSFAEELGVENASTMRKQELMFACLKQLSAKETDIIGEGVVEV
LSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVN
TLNFEDPEKSKHKVNFDNLTPLFPDERFRLEIDDPTRKDLSARVIDIVAPIGKGQRALIV
APPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRKVSDKRTFPA
IDISRSGTRKEELITDPQLLKKMYVLRRILNPMGTMDAIDFLLDKLRNTKNNAEFFESMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaaatgaaactttcagacctcaaggccaagacgccggccgagctcgtctcgttc
gccgaagagctgggggtcgagaatgccagcacgatgcgcaagcaggagctgatgttcgcc
tgcctgaagcaactgtcggccaaggaaaccgatatcatcggtgaaggcgtcgtcgaggtt
ctgtccgacggcttcggcttcctgcgttcgcccgatgccaactatttgccgggtccggac
gacatctacgtttcgccgtcccagatccgccgttttggcctgcgcaccggcgacaccatc
gagggccacatccgcagtccgaaggaaggcgaacgctacttcgcgctgctcaaggtcaat
acgctgaacttcgaggaccccgagaagtccaagcacaaggtcaatttcgacaatctgacg
ccgctgtttccggacgagcgcttccggctcgagatcgacgatccgacccgcaaggatctg
tcggcgcgggtgatcgacatcgtggcgccgatcggcaagggtcagcgcgcgctgatcgtg
gcgccgccgcgcacaggcaagaccgtgctgatgcagaacatcgcgcattcgatcaccgcc
aatcatccggaatgctatctgatcgtgctgctgatcgacgagcggccggaagaagtcacc
gacatgcagcgctcggtgaagggcgaggtggtgtcctcgaccttcgacgaacccgcggtg
cgccacgtccaggtcgccgagatggtgatcgagaaggccaagcggctggtcgaacacggc
cgcgacgtcgtcatcctgctcgactcgatcacgcgtctgggccgcgcctacaacacggtg
gtgccgtcctccggcaaggtgctgaccggcggcgtcgacgccaatgcgctgcagcggccg
aagcgctttttcggcgccgcgcgcaacatcgaagagggcggctcgctcaccatcatcgcc
accgcgctggtcgataccggctcgcgcatggacgaagtgatcttcgaagagttcaagggc
acgggtaacagcgaactgatcctcgaccgcaaggtctcggacaagcgcaccttcccggcg
atagacatctcgcgctccggcacccgcaaggaagagctgatcaccgatccgcaactcttg
aagaagatgtacgtgctgcgccgcatcctcaatccgatgggcaccatggacgcgatcgac
ttcctgctcgacaagctgcgcaacaccaagaacaacgccgaattcttcgagtcgatgaac
acctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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