KEGG   Rhodopseudomonas palustris BisB18: RPC_0419
Entry
RPC_0419          CDS       T00336                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
rpc  Rhodopseudomonas palustris BisB18
Brite
KEGG Orthology (KO) [BR:rpc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rpc03016]
    RPC_0419
Enzymes [BR:rpc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     RPC_0419
Transfer RNA biogenesis [BR:rpc03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    RPC_0419
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNase_H_2 RNase_T
Other DBs
NCBI-ProteinID: ABD85994
UniProt: Q21C92
Position
complement(450451..451065)
AA seq 204 aa
MTIRLHRGDLPDLSRYTDSVAIDTETMGLNPHRDRLCVVQLSNGDGSADVVQIPVGHSDA
PNLKKLLGDPAITKIFHFARFDLAALYNALGVMPQPVYCTKIASRLTRTYTDRHGLKDLV
REVLGVDLSKQQQSSDWGAQSLSDAQLAYAASDVLHLHGLRTRLDAMLAREGRTELAQAC
FDFLPTRAKLDLSGWAEQDIFAHS
NT seq 615 nt   +upstreamnt  +downstreamnt
atgaccatccgcctgcatcgcggcgatctgccagacttgtcgcgctacaccgattcggtg
gcgatcgacaccgaaaccatggggctgaacccgcatcgcgaccggctctgcgtggtgcag
ctctccaacggcgacggcagcgccgacgtggtgcagatcccggtcggccacagcgacgcg
cctaacctgaagaaactgctgggcgacccggcgatcaccaagatcttccatttcgcgcgg
ttcgatctcgcggcgctgtacaacgcgctcggggtgatgccgcagccggtgtattgcacc
aagatcgcctcgcggctgacccgcacctatacggatcggcacggcctgaaagatctggtg
cgcgaagtgctcggcgtcgatttgtcgaagcagcagcaatccagcgactggggcgcgcaa
agtctcagcgacgcgcaattggcctacgccgcctccgacgtgctgcatttgcacggcctg
cgcacaaggctcgacgccatgctggcgcgtgaaggccgcaccgaattggctcaggcgtgt
ttcgatttcctgccgacccgcgccaaactcgacctctcaggctgggcggaacaggatatt
ttcgcgcattcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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