KEGG   Rhodopseudomonas palustris BisB5: RPD_0178
Entry
RPD_0178          CDS       T00345                                 
Name
(GenBank) sigma-54 factor, core-binding region
  KO
K03092  RNA polymerase sigma-54 factor
Organism
rpd  Rhodopseudomonas palustris BisB5
Pathway
rpd02020  Two-component system
rpd02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:rpd00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    RPD_0178
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    RPD_0178
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rpd03021]
    RPD_0178
Transcription machinery [BR:rpd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     RPD_0178
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR
Other DBs
NCBI-ProteinID: ABE37418
UniProt: Q13ES1
Position
201922..203562
AA seq 546 aa
MALTQRLEFRQSQSLVMTPQLMQAIKLLQLSNLDLAVFVEDELEKNPLLDRASDNAEPLV
AGEASMDRAENAGDEFGGSEAGGEASDFADNAGGDSFEPGSEEWMHRDLGSRSEIEQTLD
TGMENVFPEEPAEAAARAAQDAAPASYTEWGGGASSDEGYNLEAFVAAETSLADHLSEQL
AVALSSPSERMIGQYLIDLVDDAGYLPADLGEAAERLGTTQTEVEAVVGVLQTFDPPGIC
ARSLAECLAIQLRELDRFDPAMQALIEHLDLLAKRDVVSLRKICGVDDEDLADMIGEIRH
LDPKPGLKFNSSRVQTVVPDVFVRPGPDGGWLVELNSDTLPKVLVNQSYYSELSKTIRKD
GDKSYFSDCLQTATWLVRALDQRARTILKVATEIVRQQDGFFTHGVAHLRPLNLKAVADA
IQMHESTVSRVTANKYMATNRGTFELKYFFTASIASADGGEAHSAEAVRHHIRQLIDGED
PSAILSDDTIVERLRGAGIDIARRTVAKYREAMRIPSSVQRRRDKHSMLGTALTAPADRS
RDTAPA
NT seq 1641 nt   +upstreamnt  +downstreamnt
atggcgctcacgcaacgcctcgaatttcgccaatcgcagtcgctggtgatgacgccgcag
ctgatgcaggcgatcaagctgctgcaactgtccaatttggatctcgcggtgttcgtcgag
gacgagctcgagaagaacccgctgctggaccgcgccagcgacaacgccgaaccgctggtt
gccggcgaagcgtcgatggaccgcgccgagaatgcgggtgacgagttcggcggcagcgag
gccggcggcgaggcatcggacttcgccgacaacgcaggcggcgattccttcgagccgggc
agcgaagaatggatgcaccgcgatctcggcagccgcagcgagatcgagcagacactcgat
accggcatggagaacgtgttcccggaggagccggccgaggctgcggcccgcgccgctcag
gacgcggcgccggcgtcatataccgagtggggcggcggcgcctccagcgacgagggctac
aatctcgaagccttcgttgcggccgagacctcgctggccgaccatctcagcgagcagctc
gcagtcgcgctgtcctcaccatcggaacgcatgatcgggcaatatctgatcgacctcgtc
gacgatgcgggctacctgccagccgatctcggtgaggccgccgagcgtctcggaacgacc
cagaccgaagtcgaagccgtggtcggcgtgctgcaaaccttcgacccgccgggcatctgc
gcgcgttctttggccgaatgcctcgccattcaattgcgtgaactcgaccggttcgacccg
gcgatgcaggcgctgatcgagcacctcgatctcttggccaagcgcgacgtcgtcagcttg
cgcaagatttgcggcgtcgatgacgaggacctcgccgacatgatcggcgaaatccgtcac
ctcgatccgaaacctggcctgaagttcaactcctctcgcgtgcagaccgtcgtgcccgat
gtgttcgtgcgccccggccccgacggaggctggctggtcgaactcaacagcgacacgctg
ccgaaggtgctggtcaaccagtcctattactcggagttgtcgaagacgatccgcaaggat
ggcgacaaatcctacttctccgactgcctgcagaccgcaacctggctggtgcgcgcgctc
gaccagcgcgctcgcaccattttgaaggtcgcgaccgagatcgtgcgccagcaggacggc
ttcttcacccacggcgtcgcgcatctgcgaccactgaatctgaaagcggtggccgacgcg
atccagatgcacgagtcgacggtgtcgcgcgtgaccgccaacaaatatatggcgaccaac
cgtggcacgttcgaactgaagtatttctttaccgcgtcaatcgcctccgccgatggcggc
gaggcgcattccgccgaagccgttcgtcatcacatccggcaattgatcgatggcgaggat
ccgtcagcaattctgtcggacgacacgatcgtggagaggctgcgcggagccggcatcgat
atcgcacgtcgtaccgtcgcgaaatatcgcgaggcgatgcgcatcccctcgtcggtgcaa
cggcgacgcgacaagcacagcatgctcggcacggccctgacggcgccagccgatcggtcc
cgcgacaccgctccggcttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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