KEGG   Rhodopseudomonas palustris BisB5: RPD_2594
Entry
RPD_2594          CDS       T00345                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
rpd  Rhodopseudomonas palustris BisB5
Pathway
rpd02024  Quorum sensing
rpd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rpd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RPD_2594
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    RPD_2594
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rpd03019]
    RPD_2594
   03036 Chromosome and associated proteins [BR:rpd03036]
    RPD_2594
Messenger RNA biogenesis [BR:rpd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     RPD_2594
Chromosome and associated proteins [BR:rpd03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    RPD_2594
SSDB
Motif
Pfam: Hfq
Other DBs
NCBI-ProteinID: ABE39823
UniProt: Q137B6
Position
2908563..2908811
AA seq 82 aa
MAADRAQNLQDTFLNHVRKTKTPLTIFLVNGVKLQGIVTWFDNFCLLLRRDGHSQLVYKH
AISTIMPGAPIQLFEGGEDAPA
NT seq 249 nt   +upstreamnt  +downstreamnt
atggcggcagaccgcgcacaaaacctacaagacaccttcctgaaccatgttcgaaaaacg
aagactcctctgacgatcttcctggtgaacggagtcaagttgcaaggcattgtcacctgg
ttcgataatttttgcctgttactgcggcgcgatggccattcgcagctggtctacaagcac
gcgatctcgacgatcatgcccggtgcgccgatccagttgttcgagggcggcgaggacgca
ccagcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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