KEGG   Rhodopseudomonas palustris BisB5: RPD_2758
Entry
RPD_2758          CDS       T00345                                 
Name
(GenBank) excinuclease ABC, A subunit
  KO
K03701  excinuclease ABC subunit A
Organism
rpd  Rhodopseudomonas palustris BisB5
Pathway
rpd03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rpd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    RPD_2758
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpd03400]
    RPD_2758
DNA repair and recombination proteins [BR:rpd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RPD_2758
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      RPD_2758
SSDB
Motif
Pfam: UvrA_DNA-bind UvrA_inter ABC_tran SMC_N AAA_29 DnaJ_CXXCXGXG RsgA_GTPase AAA_25 AAA_21 nSTAND1 BCA_ABC_TP_C
Other DBs
NCBI-ProteinID: ABE39986
UniProt: Q136K3
Position
3077117..3080143
AA seq 1008 aa
MIKAKRQQSQQQAVASSRTAITIRGAREHNLKNVDVVIPRDKLAVFTGLSGSGKSSLAFD
TIYAEGQRRYVESLSAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTE
IYDYMRLLWARVGVPYSPATGLPIESQTVSQMVDRVLALPEGTRLYLLAPVVRGRKGEYR
KELAEWLKKGFQRVKIDGAFHELAEAPTLDKKFPHDIDVVVDRIVVRPDIGQRLAESFET
ALKLAEGLAVIEYADAPAAAASAPAEPGQDEPGDKKKKADKKVAKIHDKTGAERILFSEK
FACPVSGFTIPEIEPRLFSFNNPYGACPACGGLGIEQHIDADLVVPDKELTLRKGAIAPW
AKSSSPYYLQTLTALAKYYKFTLDTKWKDLTKKVQTALLYGSGDDEIKFSYEDGVRSYDT
KKPFEGVVTNIERRFRETESEWAREELGKYFSDVPCDACHGHRLKPEALCVKIGGKHIGD
ISELSVRRAGEWFEAVPAALNKQQNEIATRILKEIRDRLSFLLDVGLNYLTLARAAGTLS
GGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKRLRDLGNTVIVVEHDE
DAIRLADFVLDIGPGAGVHGGHIVAQGTPAEVMANPKSLTGKYLTGELSVPIPERRPPNH
RRTLKLVNARGNNLKNVTAEIPLGLFTCVTGVSGGGKSTLLIDTFYKAIARKLNNASEPP
APHDRIEGLEHIDKIIDIDQSPIGRTPRSNPATYTGAFTPIREWFAGLPESKARGYEPGR
FSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCKGKRYNRETLEVLFKGKSIADVLD
MTVEEAADFFKAVPRVRETFKTLHRVGLDYIHVGQQATTLSGGEAQRVKLAKELSKRATG
RTLYILDEPTTGLHFHDVAKLLEVLHELVAQGNTVVVIEHNLEVIKTADWVIDLGPEGGD
GGGEIVAWGPPEDIVKAPRSYTGKFLKPVLEKKGPAAVRKKKADEAAE
NT seq 3027 nt   +upstreamnt  +downstreamnt
gtgatcaaggcgaagcgccagcagtcccaacaacaggccgtggcctcgagccggacggcc
atcaccattcgcggcgctcgcgagcacaatctgaagaacgtcgacgtcgtcatcccgcgc
gacaagctggcggtgttcaccggcctgtccggctccggcaagtcgtcattggcgttcgac
accatctacgccgagggccagcgccgctatgtcgaatcgctgtcggcctatgcccggcag
ttcctcgagatgatgcagaagccggacgtcgaccagatcgacgggctgtcgccggcgatc
tcgatcgagcagaagaccacctcgaagaacccgcgctcgaccgtcggcaccgtcaccgag
atctacgactacatgcggctgttgtgggcgcgcgtcggcgtgccctattcgccggcgacg
ggcctgccgatcgagagccagaccgtctcgcagatggtcgaccgcgtgctggcgttgccg
gaaggcacgcggctgtatctgctggcgccggtggtgcgcggccgcaagggcgagtaccgc
aaggagctcgccgagtggctgaagaaggggtttcagcgcgtcaagatcgacggcgcattc
catgagctggccgaggcgccgacgctcgacaagaaattcccgcacgacatcgacgtggtg
gttgaccgcatcgtcgtccgccccgacatcggccaacgcctggcggaaagcttcgagacc
gcgctgaagctcgccgaggggctggcggtgatcgaatatgccgatgcgccggccgccgcc
gcctcggcgccagccgaacccggtcaggacgagcccggcgacaagaagaaaaaggccgac
aagaaggtcgccaagattcacgacaagaccggcgccgaacgcatcctgttctcggagaaa
ttcgcctgcccggtgtccggcttcaccattccggagatcgagccgcgactgttctcgttc
aacaacccctatggcgcctgcccggcctgcggcgggctcggcatcgagcagcatatcgac
gccgatctggtggttcccgacaaggagctgacgctgcgcaaaggcgcgatcgcgccgtgg
gcgaagtcgtcgtcgccttattatctgcagaccctgacggcgctggcgaagtactacaag
ttcacgctcgacaccaaatggaaggacctgaccaagaaggtccagaccgccctgctctat
ggctcgggcgacgacgagatcaagttttcctacgaggacggcgtccgctcctacgacacc
aagaagccgttcgagggcgtggtcaccaatatcgagcggcgcttccgcgagaccgagagc
gaatgggcgcgcgaggagctcggcaagtacttctccgacgtgccgtgcgacgcctgccat
gggcaccgcctcaagcccgaggcgctgtgcgtcaagatcggcggcaagcacatcggcgac
atcagcgaattgtcggtgaggcgcgccggcgaatggttcgaagccgtgccggccgcgctc
aacaagcagcagaacgagatcgccacccggatcctgaaagagatccgcgaccggctgtcg
ttcctgctcgacgtcggcctgaactatctgacgctggcgcgcgccgccggcacgctcagc
ggcggcgaaagccagcgcattcggctggcctcgcagatcggctcgggcctcaccggcgtg
ctctacgtactggacgagccgtcgatcggcctgcaccagcgcgacaacgcccggctgctc
gacacgctgaagcggctgcgcgacctcggcaacaccgtgatcgtggtcgagcacgacgag
gacgccattcggctggccgatttcgtgctcgatatcggccccggcgccggcgtccatggc
ggccacatcgtcgcgcagggcacgcccgccgaggtgatggccaatccgaaatcgctgacc
ggcaaatatctcaccggcgaactctcggtgccgatcccggagcgcaggccaccgaaccat
cgccgcaccctcaagctggtcaacgcccgcggcaacaacctcaagaacgtcaccgccgaa
attccgctcggcctgttcacctgcgtcaccggcgtgtccggcggcggcaagtcgacgctg
ctgatcgacaccttctacaaggcgatcgcccgcaagctgaacaacgccagcgagccgccg
gcgccgcacgaccgcatcgagggcctcgagcacatcgacaagatcatcgacatcgaccag
tcgccgatcggccgcaccccgcgctccaaccccgccacctacaccggagcgttcaccccg
atccgcgagtggttcgccgggctaccggaatccaaggcgcgcggctacgagcccggccgg
ttctcgttcaacgtcaagggcggccgctgcgaagcctgtcagggcgacggcgtcatcaag
atcgagatgcactttttgcccgacgtctacgtcacctgcgatgtgtgcaaaggaaaacgc
tacaaccgcgaaaccctcgaagtgctgttcaagggcaagtcgatcgccgacgtgctcgac
atgaccgtcgaggaagccgccgacttcttcaaggcggtaccgcgcgtccgcgagaccttc
aagacgctgcaccgcgtcggcctcgactacatccatgtcggccagcaggccaccacgctg
tccggcggcgaagcccagcgcgtcaagctcgccaaggaactgagcaaacgcgccaccggc
cgcacgctctacatcctcgacgagccgaccacgggactacattttcacgacgtcgccaaa
ctgctcgaagtgctgcacgaactggtcgcgcagggcaacaccgtggtggtgatcgagcac
aatctcgaagtgatcaagaccgccgactgggtgatcgacctcggacccgaaggtggcgac
ggcggcggcgaaatcgtcgcctggggcccgccggaagacatcgtcaaggcgccgcggagc
tacacggggaaattcctgaagccggtgctggagaagaagggaccggcggcggtgcggaaa
aagaaggcggatgaggcggcggagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (19)   

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