KEGG T00345: RPD

Rhodopseudomonas palustris BisB5: RPD_2889

Entry

RPD_2889          CDS       T00345

Name

(GenBank) histone-like DNA-binding protein

K03530

DNA-binding protein HU-beta

Organism

rpd Rhodopseudomonas palustris BisB5

Brite

KEGG Orthology (KO) [BR:rpd00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rpd03032]
    RPD_2889
   03036 Chromosome and associated proteins [BR:rpd03036]
    RPD_2889
   03400 DNA repair and recombination proteins [BR:rpd03400]
    RPD_2889
DNA replication proteins [BR:rpd03032]
Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    RPD_2889
Chromosome and associated proteins [BR:rpd03036]
Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    RPD_2889
DNA repair and recombination proteins [BR:rpd03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      RPD_2889

SSDB

Motif

Pfam:

Bac_DNA_binding HU-HIG HU-CCDC81_euk_2 HU-CCDC81_bac_2

Other DBs

NCBI-ProteinID:

ABE40117

UniProt:

Q135X2

Position

3216892..3217203

AA seq 103 aa
MAKKAVAKAATPTTVTLKHLAAALAEEHELSKKQTEAILGDLVARITKHLKKGERIRIVG
LGILQVRKRAARTGRNPATGETIQIKASKKVAFRAAKELKEAI

NT seq 312 nt +upstreamnt +downstreamnt
atggcgaagaaagcagttgcgaaagccgcgacacccacaaccgtcaccctgaagcatctc
gccgcggcgctcgccgaagagcacgagctgtcgaagaagcagaccgaagccatcctcggc
gacctcgtcgcccgcatcaccaagcacctcaagaagggcgagcgcatccgcatcgtcggc
ctcggcatcctgcaggtccgcaagcgcgctgcccgcaccggccgcaaccccgccaccggc
gagaccatccagatcaaggccagcaagaaggtcgcgttccgcgccgcgaaggaactcaag
gaagccatctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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