KEGG   Ralstonia pickettii 12D: Rpic12D_5096
Entry
Rpic12D_5096      CDS       T00925                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
rpf  Ralstonia pickettii 12D
Pathway
rpf03420  Nucleotide excision repair
rpf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rpf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Rpic12D_5096
   03430 Mismatch repair
    Rpic12D_5096
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpf03400]
    Rpic12D_5096
Enzymes [BR:rpf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Rpic12D_5096
DNA repair and recombination proteins [BR:rpf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Rpic12D_5096
   MMR (mismatch excision repair)
    Other MMR factors
     Rpic12D_5096
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 Viral_helicase1 AAA_30 AAA_12 CYP38_PsbQ-like
Other DBs
NCBI-ProteinID: ACS66330
UniProt: C6BQ56
Position
pRp12D01:complement(386747..388588)
AA seq 613 aa
MSLNPSQHRVAYGHGNILAVAGPGSGKTKTIITKIGVTLDADRKNRVGAVTFTSDTASEM
RHRLTRDIGPDVLKRVELGTFHKLSIDHLRRHKMLGKIATPPEQKTFLRRAIAVTNTEID
NETAFKLFENFKCAIEPDESEIPPFIAAYSEMLKRNRVVDLYDVMRDCALKMTNGELPPL
PVTHLLVDEFQDSDEIQFVWMMAHAKRGIPVTIVGDDDQSIYAWRRALGYKGMIDFVEQT
GAEIIPLGENYRSHSEILGPADRLIRHNAGQRVEKDLVAKRGPGGSTHVYAVSAANRQDG
EEHDAVALQTQFLVPFILEFALPEEEQPGGRTAIQPEQWAILARTNFMLDTVEAVLDEFN
IRSRRNGASFWDKDYINTYLQLLVSVETMSRSGIDHALAFVGTGEDALSQLHKRIPGATM
APFFEREFDDYGDIAKIDAEHMRSLQQLLVTWRQDALYRKIPGTNTPMRAVNQAIDSAAT
FLTMGMRPGQYKDRVSKHLTKAADILKRRTGSLVSRVQSVQKPKGKDDPASVGLFTMHSC
KGLEFGNTAIVGADKDIIPSLGEGSSEVDERRLMYVAMTRAKNRLFILHSPANDTPYIAE
AGLASNPATVYPD
NT seq 1842 nt   +upstreamnt  +downstreamnt
gtgagtctcaatccttcccagcaccgcgtggcatacggccacggcaacatccttgccgtg
gccggccccggctcgggaaaaaccaaaacgatcatcaccaagatcggggtcactcttgat
gccgaccggaagaaccgagtcggcgctgtgaccttcacgagcgatacggcgtctgaaatg
cgccaccgcctgactcgggacatcgggcccgacgtgctcaaacgcgtcgagttgggaaca
tttcacaagctctcgatcgaccaccttcgccggcacaagatgctcggcaagatcgctact
ccgcccgagcaaaagaccttcctcaggcgtgcgattgcggttactaacaccgaaatcgac
aacgaaacagccttcaagctgtttgagaacttcaagtgcgccatcgaaccagacgagtcg
gagattccaccgttcatcgcggcatacagcgagatgctcaagcgcaaccgtgttgtcgac
ttgtatgacgtcatgcgcgactgcgcgctgaagatgaccaacggagagcttccccctctc
ccggttacccatcttctcgtagacgagttccaggacagtgatgagatccagtttgtctgg
atgatggcccatgccaaaaggggcattcctgtcaccatcgtaggcgatgacgatcagtcc
atctatgcctggcgtcgagccttaggctacaagggcatgatcgatttcgttgagcagact
ggcgctgagatcatccccctgggcgaaaactaccgatcccactcggagattctcggcccg
gcagaccgcctgatccgtcacaacgcaggccagcgggttgagaaggaccttgtggccaag
cgcggcccgggcggatcgactcatgtttacgccgtatctgcagcgaaccggcaggatggg
gaggagcacgatgctgtggctcttcaaacacagtttctcgttcccttcatccttgaattt
gcgctacccgaagaggagcaacccggtggaagaacggctattcagccagaacagtgggcg
attctcgcgcgcaccaacttcatgctcgacacggtcgaagcagtcctagacgagttcaac
attcgctcccggcggaacggagcttcgttctgggacaaggactacatcaatacctatctg
cagctcctcgtgtccgtggagacaatgagccgcagcggtattgaccacgcactggcgttc
gtcgggacgggtgaagacgctctcagtcagctccacaagcggatacctggcgcgactatg
gctccgttcttcgagcgagagtttgacgactacggcgacattgccaagatcgacgcagaa
catatgcgttcgctgcagcagcttcttgtcacttggcgccaagatgcgctgtataggaag
attcctggtacgaacacgcctatgcgagcggtcaaccaggccatcgatagcgctgccact
ttcctcaccatgggaatgcgcccgggccagtacaaggaccgtgtgtccaaacatctaacc
aaggcggcagatattctgaagcgccgaaccggatctttggtgtcccgcgtccagagtgtc
cagaagcccaaggggaaggatgaccctgcatcagttggcctgttcaccatgcacagctgc
aagggcctagagtttggcaacacggcaattgtcggcgccgacaaggacatcatcccgtct
cttggcgagggtagctccgaagtcgacgaacgtcggttgatgtacgtggcgatgactcga
gcgaagaaccggctcttcatcctccactctccagcaaacgacacaccatacatcgctgag
gctggcttggcttcgaaccccgccacggtctaccccgactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (24)   

Download RDF
DBGET integrated database retrieval system