KEGG   Rickettsia philipii: RSA_03860
Entry
RSA_03860         CDS       T01759                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rph  Rickettsia philipii
Pathway
rph03410  Base excision repair
rph03430  Mismatch repair
rph03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rph00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    RSA_03860
   03430 Mismatch repair
    RSA_03860
   03440 Homologous recombination
    RSA_03860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rph03400]
    RSA_03860
DNA repair and recombination proteins [BR:rph03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     RSA_03860
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     RSA_03860
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      RSA_03860
SSDB
Motif
Pfam: DHHA1 RecJ_OB DHH
Other DBs
NCBI-ProteinID: AFB26326
UniProt: H6PTX9
Position
679410..681173
AA seq 587 aa
MKPQVSINGKIWQQKLINEDIVTELCRSFKISDLLARIVSLRVNNLEEVENFLRPKIKNL
LPDPFHLLDMEKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILCDIYVP
DRIAEGYGPTPFAMQKIKDHGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHITTEIL
PDAVAIVNPNRIDEKSEYKHLAAVGVAFLFATAILSNLKKQNYFTQTMLQPNLMQYLDLV
ALGTVCDMMKLTGLNRAFVASGLKVMQQRQNIGIKTLYDMAGLHEIPKCYHLGFILGPRI
NAGGRVGKSSLGAHLLSTSCSNEANKLAKELEKHNNERKVIELLMIEEAMEIALTQQDSS
VLFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIALNDGIGKASCRSILGIDFGAEIINAKS
KDLLIAGGGHAMAAGFTVTAEKLQELQNFFNNAFRISITKLENYKHAEYDIDLTVNSVNF
PLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALSAIAF
NSVGTAFEDVLLSPKAKNIAAIGTLKTNNWQDNYTIQLIIKDILLKE
NT seq 1764 nt   +upstreamnt  +downstreamnt
atgaaaccacaagtatctataaacggtaaaatctggcagcagaaactgattaacgaagat
atagtcaccgagttatgtcgtagtttcaaaattagtgatttacttgctaggatagtatca
ttaagagtaaataatctagaggaagtagaaaatttcttgagaccgaaaatcaaaaattta
ttacctgatcctttccatctacttgatatggaaaaggctgtagatagaactgttacagct
attttaaataaccaaaaaatatgtatctttgccgattatgatgtagacggtgctacttca
gccgctttacttaaaaatatttttagagatttaaatatactatgtgatatttatgttcct
gatcgtatagctgaaggatacggtccaactccttttgctatgcaaaaaattaaagatcac
ggcacagaattattaattacggttgattgcggtgctatggcacatgaagccctaaaatac
gcaaaagacgttaaccttgatgttatagtaatcgatcatcatataactacggaaatatta
ccggatgcagtagctatagtaaatccaaatcgtattgatgaaaaaagcgaatataaacat
ttggcagccgtaggagttgctttcttatttgcaactgcaatattatcgaatttaaagaag
caaaattatttcacgcaaacaatgcttcagcctaatctaatgcagtatctagatttagtg
gctcttggtactgtttgcgatatgatgaaattaacaggcttaaatcgtgcatttgttgca
agcggattgaaagtaatgcaacaaaggcaaaatatagggattaaaacattatatgatatg
gcagggcttcatgaaataccaaaatgttatcatttagggtttattctaggtccgcgtatc
aatgcaggcggtagagtaggaaagtcaagtttaggggctcatctcctatctactagttgt
tctaatgaagcaaataaattagctaaagaacttgaaaaacacaataatgagcgtaaagta
attgagttattaatgatagaagaagcgatggaaattgctttgacacaacaagatagtagt
gtattatttatcgtaaaagaaggatggcatccaggcgttataggaatcgttgccggcaaa
ttaaaagaaaaatttgataagccggtggcagttatagctttaaatgacgggattggtaaa
gcttcatgccgttctattttaggtattgattttggtgctgaaattatcaatgctaaaagc
aaagatttgctaatagcaggcggaggtcatgctatggcggcaggttttaccgtaacggct
gaaaaattacaagaattgcagaatttttttaataatgcttttagaattagtataactaaa
ctagaaaattataagcatgcggaatatgatattgatttaacggttaatagtgtgaatttc
cctttaatggaggaattaaacactttagagcctttcggtcaaggaaatcatgagcctata
tttaaatttgatgatttatttgtattaaaagcggatatcgttggaagtaagcatattaaa
tgtatgcttgttccaaataagcgaggctttggtaataaagccttatctgctattgctttt
aattcggtaggcactgcatttgaagatgttttattaagccctaaagcaaaaaatattgct
gcaataggaacgttaaaaactaataattggcaagataattatactattcaattaattata
aaagatatacttctaaaagagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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