KEGG   Ralstonia pickettii DTP0602: N234_14665
Entry
N234_14665        CDS       T03172                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
rpj  Ralstonia pickettii DTP0602
Pathway
rpj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rpj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    N234_14665
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rpj03019]
    N234_14665
   03009 Ribosome biogenesis [BR:rpj03009]
    N234_14665
Enzymes [BR:rpj01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     N234_14665
Messenger RNA biogenesis [BR:rpj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     N234_14665
Ribosome biogenesis [BR:rpj03009]
 Prokaryotic type
  rRNA processing factors
   N234_14665
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-GeneID: 17102839
NCBI-ProteinID: AGW91270
Position
1:3146544..3149663
AA seq 1039 aa
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAFFKEGIDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLTVPDGMSIIARTAGIGRSAEELQ
WDLNYLLQLWKAIDGAAGDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQAR
AFMSVVMPDNMSRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSV
DVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESGKAQKDVETR
LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRQEINLIELRFKVNVLLIPNKHLETPH
YKLERLRHDDPRLEESTASYRMAEAAAKELEADTSYSSRRKEEAKPRQEAAVKGITPEQP
APVSVPRPERAPKPETPAAPPVPATQPVVSGGFIAWLKGLFGARPATPPVVEPAKPAATA
ETRGAEGRRERGPRGEGRGQRGERGERGERAERGERTERGERGERGERQPRGQRAERAER
AERQGGERGEQRETRGERQGRQPRQQGEGQATPAVARMGEAAQAERGQGERAEARQEGRR
ERSQERRERQRDRQRERSDLREAEAGEAPQPEAVAAAQALGVAPQAFAEESQAVRAELPE
GAEGVAETAAEGEERRRRNRRGRNRYRRERDETAQGTQGEGEGEFAQEAAEGVAPVTAEA
APQAVPQAEPAPQAAVAVAAAAEAVEAIRIAVPEGVTPAPATETAPATAPVAEQAAPVTA
PAVTEAVAAEAVAEPVVSAAVETAPAVAEVAEPVVTPAPAAEPAVAFAPAAPVVAAAPAA
PAVAAAPAAMENLEPMLASVGLQWVHTDSDKLRSAQEAAARVAPAPRVPRERKPLPPLPH
GPMILVETGGREVEMASQQ
NT seq 3120 nt   +upstreamnt  +downstreamnt
atgaaacgcatgctgttcaacgcgacgcaacaggaggaattgcgcgtcgccatcgtcgac
ggtcagaaactgatcgatatcgacatcgagactgccgggcgcgaacagcgcaagggcaac
atctacaagggcgtcatcacccgcatcgagccgtcgctggaagcctgcttcgtcaactac
ggcgaagagcgccacggcttcctgccgttcaaggaagtggcccgcgccttcttcaaggaa
ggcatcgacgtgcgcaacgcgcgcatccaggatgccctgcatgaaggccaggaactgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggcgctgaccacctttatctcg
ctggccggccgctacctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgaggaccgccaggaactgcgcgagaccatggcgcagctgaccgtgccg
gacggcatgagcatcatcgcccgtaccgccggcatcggccgctcggccgaggaactgcag
tgggacctgaactacctgctgcaactgtggaaggccatcgacggcgccgccggcgacaac
aaggccccgctgctgatctacctggaatcgagcctggtcatccgcgccatccgcgattac
ttccagccggatatcggcgagatcctgatcgacaccgacgagatctacgaacaggcccgc
gccttcatgagcgtggtgatgcctgacaacatgagccgcgtgaagaagtaccgggacgac
gtgcccctgttctcgcgcttccagatcgaacaccagatcgagtcggcctattcgcgcatg
gtgatgctgccctcgggcggcgccatcgtgatcgaccacaccgaggcgctggtctccgtg
gacgtgaactcggcccgcgccaccaagggcgccgacatcgaggaaaccgcgctgcgcacc
aacctcgaggccgccgacgagatcgcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggagtcgggcaaggcccagaaggacgtggaaacgcgc
ctgaaggacgcgctgcgccacgaccgcgcccgcgtgcagatgggcaagatcagccgcttc
ggcctgatggagctgtcgcgccagcgcctgcgcccgtcgctgtcggagggctcgcacatc
acttgcccgcgctgcaacggcaccggccatatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacaccgccgccatccattgccag
gtgccggtggaggtggctgccttcctgctgaacgagaagcgccaggaaatcaacctgatc
gagctccgcttcaaggtcaatgtgctgctgatccccaacaagcacctggaaacgccgcac
tacaagctggagcgcctgcgccacgacgatccgcgcctggaagagagcaccgccagctac
cgcatggccgaggctgccgccaaggaactggaagccgacaccagctacagcagccgccgc
aaggaagaagccaagccgcgccaggaagccgcggtcaagggcatcaccccggaacagcca
gcgccggtatcggtgccgcgtcccgagcgcgcgcccaagccggaaaccccggccgccccg
cctgtcccggccacccagccggtggtcagcggcggctttatcgcctggctgaagggcctg
ttcggcgcccgtccggcgaccccgccggtggtggaacccgccaagccggcagccaccgct
gaaacccgcggcgctgaaggccgccgcgagcgcggcccgcgtggcgaaggccgtggccag
cgtggtgagcgcggcgaacgtggtgagcgtgccgagcgcggcgagcggaccgaacgtggt
gagcgcggggaacgtggcgagcgccagccccgtggccagcgcgccgagcgcgcggaacgc
gccgagcgccagggtggtgagcgtggcgagcaacgcgagacccgtggcgaacgccagggc
cgccagccgcgccagcaaggtgaaggccaggccaccccggccgtggcccgcatgggcgaa
gcagcgcaagccgagcgtggccagggcgaacgcgccgaagcccgccaggaaggccgccgc
gagcgcagccaggagcgccgcgagcgccagcgtgaccgccagcgcgagcgcagcgacctg
cgtgaagccgaagccggcgaagcgccgcagccggaagccgtagccgccgcccaggcactg
ggcgtggcgccgcaggccttcgcggaagagtcgcaggccgtccgtgccgaactgccggaa
ggcgccgagggcgtggcagagaccgccgcggaaggtgaagaacgccgccgccgcaaccgc
cgtggccgcaaccgctatcgacgcgaacgcgacgagacggcgcaaggtacgcaaggcgaa
ggtgaaggcgaattcgcccaggaagctgctgaaggcgtcgccccggtgaccgccgaggct
gccccccaagctgtcccgcaagcggaacccgcaccgcaagctgcggtagccgtcgctgcc
gccgccgaagccgtcgaagcgatccgcatcgccgtgccggagggcgtgacgcccgcgccg
gcaactgagactgcgccggcgacagcacccgtggccgagcaggctgccccggtgaccgcc
cccgcagtgacggaagccgtcgctgccgaagccgtggccgagccggtcgtgagcgccgcc
gttgagaccgccccggccgtggcggaagttgccgagccggtggtcacgccggcaccggca
gccgagccggccgtggcattcgcaccggcggccccggtggttgctgcagcaccggccgca
ccggccgtggccgccgccccggcagcaatggagaacctcgagccgatgctcgcctccgtc
ggcctgcagtgggtccataccgacagcgacaagctgcgctcggcccaggaagctgctgcc
cgcgtcgcgcccgccccgcgggtgccgcgcgagcgcaagccgctgccgccgctgccgcac
ggtccgatgatcctggtcgagaccggtggccgcgaggtggaaatggcgtcgcagcagtaa

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