KEGG   Rickettsia peacockii: RPR_01370
Entry
RPR_01370         CDS       T00907                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rpk  Rickettsia peacockii
Pathway
rpk03030  DNA replication
rpk03410  Base excision repair
rpk03420  Nucleotide excision repair
rpk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rpk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RPR_01370 (ligA)
   03410 Base excision repair
    RPR_01370 (ligA)
   03420 Nucleotide excision repair
    RPR_01370 (ligA)
   03430 Mismatch repair
    RPR_01370 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rpk03032]
    RPR_01370 (ligA)
   03400 DNA repair and recombination proteins [BR:rpk03400]
    RPR_01370 (ligA)
Enzymes [BR:rpk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     RPR_01370 (ligA)
DNA replication proteins [BR:rpk03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     RPR_01370 (ligA)
DNA repair and recombination proteins [BR:rpk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     RPR_01370 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RPR_01370 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     RPR_01370 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      RPR_01370 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT
Other DBs
NCBI-ProteinID: ACR47182
UniProt: C4K0T1
Position
complement(228071..230140)
AA seq 689 aa
MQNIDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHL
ILENSPSKKVGAKIANKFAKVMHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIFC
EPKIDGLSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKIDNVPEFLEVRGEI
YIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTEQNL
ASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLNDFA
LQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSR
ATLHNFQEIARKDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTETFDTPLFCLSCNSKL
HYTPEDIIIRCDNGLNCPAQNYERIHHFVSKNAMDIEGLGRKQVEFLIDKGLISNPLDIF
FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRHIGEQNAKLLA
RAFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGEI
LNIEDYKETREQSSLTDKIVVFTGSLPTISRAEAKATAEKLGAKVAVGVSSNTDLVVAGV
DAGSKLKKAKELNIKIIDEEEWLTLIKNV
NT seq 2070 nt   +upstreamnt  +downstreamnt
atgcaaaatattgatttaatatctgaagaggaagcacaaaaattactagaagaactcgct
gataaaattgcagcgtataaccatgcttattatatagaagataatcctttagtttctgat
agcgagtatgatcagctatttaataccaatctcaagttagaacaaaaatttcctcattta
attttagaaaatagtcctagcaaaaaagtaggggctaaaatagcaaataaatttgctaaa
gttatgcatcaagtgcccatgctatctctcagtaatgcttttgatgagcaagatgtgaga
gattttgtagaccgtataaaaattttcttacgccttaatgagtttgctcctatcttttgt
gaacctaaaatagacggtttgtctttttctgctgtttataaacacggggtgcttacaacg
ggagctacaagaggtgacggatatgtcggtgaagatataacagcaaatattaaaacaatc
aaaaattttcctcataaaatagataatgttccggagtttttagaagtacgaggggaaatt
tatattgaaaaacaagattttttaaatctaaataaagaacaagaagagcagggcaaggat
aaatttgccaatcctcgtaatgctgctgccggatcactgcgtcagcttgattcttctatt
acggctaaaagaccgctcaaatattttgtatattcaggaggggtaactgaacagaatctc
gcttcttcacaagatcaattacttacaaaattaaaagaatgcggctttaacattaatgaa
atatctaaacttgcgagttctgaagaagaaattttcgccttttacgaatatctcaaaaca
aatagagaaaatttaccttatgaaattgatggagtagtatataagctaaatgattttgca
ctgcaaaatagaatgggctttattgcacgaagtccacgctttgctaccgctcataaattt
cctgcaataataggacaaacaaagttactttctattactgtacaggtcggtagaactggt
acgttaacgccggtagccgaacttgaacccatagaaataggcggggtaactgttagcaga
gcaacattacataatttccaagaaattgcacgaaaagatttgcggattaaggattatgta
ttcctgcaacgtgctggtgacgttattcctaaaatcatgggagttgattttgataaacgt
cctaatgatacagaaacgtttgatactcctttattttgtctgtcatgcaattctaaattg
cattatacgcctgaagatattattatacgctgtgataatggccttaactgccctgctcag
aattatgagcgtatccatcatttcgtatcgaaaaatgctatggatattgaggggcttggg
cgtaagcaagttgagtttttaatagataagggattgattagtaatcctttagatattttc
tttttaaaagaaaaaaatgactctagcttagcaaaacttgaaaatatggatggatggggt
aaaaaatcagtagaaaatctttttaaaaatatagaaaaatcaaaaaacgttagtttgcca
agatttatatatgcattaggcataaggcatatcggtgaacaaaatgctaaattacttgct
agagcatttggcagctataataattttatagctcaaatggaattgcttagaacaaatgag
cctgatatttatcaaaaactaaacaatttagaaggaatcggtgataagattttagtagat
attattgatttttttgatgttaaagaaaatattgagcttatcaaaaaacttggtgaaata
ttaaatattgaagattataaagagactagagaacagagtagtttaacggacaagatagtc
gtatttaccggtagtttaccgacgatatctagagcagaagctaaagcaacggctgagaag
cttggggctaaagttgcagttggcgtatcatcgaacacggatttagttgtagccggcgtt
gatgcaggcagtaaacttaaaaaagctaaagagcttaatattaaaattattgatgaagaa
gaatggcttacgcttataaaaaatgtttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (27)   

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