KEGG T06598: CFBP5875

Agrobacterium pusense CFBP5875: CFBP5875_19690

Entry

CFBP5875_19690    CDS       T06598

Name

(GenBank) DNA topoisomerase IB

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

rpus Agrobacterium pusense CFBP5875

Brite

KEGG Orthology (KO) [BR:rpus00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rpus03032]
    CFBP5875_19690
   03400 DNA repair and recombination proteins [BR:rpus03400]
    CFBP5875_19690
Enzymes [BR:rpus01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     CFBP5875_19690
DNA replication proteins [BR:rpus03032]
Prokaryotic type
  DNA Topoisomerases
   CFBP5875_19690
DNA repair and recombination proteins [BR:rpus03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      CFBP5875_19690

SSDB

Motif

Pfam:

Topoisom_I Top1B_N_bact

Other DBs

NCBI-ProteinID:

QCL86814

Position

linear:complement(1208956..1209972)

AA seq 338 aa
MPQPPTRLLAKIGLAYVSDQEPGISREKRGRGFCYRLPGGELLCDSDELKRIKSLGVPPA
YKDVWICIDPSGHLQATGFDARGRKQYRYHPDWHTLRGETKFFQLKSFGRALPAIRRRAM
ADVGKQDHGQEMTLAALTLLLDAAYLRVGNRSYLESNGTYGATTLLKRHVSFGETIELRF
AAKGGQKVKRQLRHPRLQKILEEIADLPGKELFVWQDSENRVHSVDSSDLNAYLSRIGGQ
GISAKTFRTWGGTLAAFCNAMEHVAAGEKPSIKGMCQAAATELSNTPAICRKSYVHPAVL
DIATEEKAQKKLSRILKVGAKPVSGLRADERRLLAFLP

NT seq 1017 nt +upstreamnt +downstreamnt
atgccacagccgccaacccgccttcttgccaaaatcggacttgcctatgtcagtgatcag
gaaccgggtatttcccgcgaaaaacgcggacgcggtttctgttaccggctgccgggcggc
gaactcctctgcgatagtgatgagctgaagcgcatcaaatcgctcggtgtaccgcccgcg
tataaggatgtctggatctgcatcgacccgtcggggcatctgcaggccaccgggtttgat
gcccgcggccgaaagcaatatcgttatcatcccgactggcatacgctcaggggagaaacg
aagttcttccagctcaaaagcttcggaagggcgctccctgccatccgccgtcgcgccatg
gccgacgtcggtaaacaggaccacgggcaggaaatgacgcttgcagccctcaccctgttg
cttgatgccgcctatttgcgcgtcggaaatcgctcctatcttgagagtaacggcacctat
ggcgcaacgacattgctcaagcggcacgtttcgttcggcgaaaccattgaattgcgcttc
gccgccaaaggcgggcagaaggtgaaaaggcaattgcgacacccgcggctacagaaaatc
ctggaggagattgccgatcttcccggcaaggaactcttcgtctggcaggatagcgaaaac
cgggttcactccgtcgattccagcgatctcaacgcatatctctcacgcatcggcggccag
ggcatttccgccaagaccttccgcacctggggcggaacgctcgcggccttctgcaacgcc
atggagcatgtggcagccggtgaaaaaccgagcataaaaggcatgtgccaggctgcggcg
accgagctttccaatacgcctgccatctgccgcaagagctatgtgcaccccgctgttctc
gatatcgccacggaggaaaaggcccagaaaaagctcagccgcatcttgaaggtcggggca
aaacccgtctccggcctcagggcggatgaacgacgtctgctggcctttttaccctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

Download RDF

DBGET integrated database retrieval system