KEGG   Rickettsia prowazekii Chernikova: M9W_00670
Entry
M9W_00670         CDS       T01789                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
rpw  Rickettsia prowazekii Chernikova
Pathway
rpw03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rpw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    M9W_00670 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rpw03021]
    M9W_00670 (rpoB)
   03400 DNA repair and recombination proteins [BR:rpw03400]
    M9W_00670 (rpoB)
Enzymes [BR:rpw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     M9W_00670 (rpoB)
Transcription machinery [BR:rpw03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     M9W_00670 (rpoB)
DNA repair and recombination proteins [BR:rpw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      M9W_00670 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 DUF5121
Other DBs
NCBI-ProteinID: AFE48963
Position
158850..162974
AA seq 1374 aa
MVSLRDNIESQPLSHNRRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNK
GLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVDECSQRSLSYAAPLKVTLRLSIWDI
DEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVH
SSGKLLYSARVIPYRGSWLDFEFDAKDIIYFRIDRKRKLYATTLLRAIGMSTEEIIKFYY
NSVTYKFVKNKGWSVKFIPQHITAHRLTSDLVDADTGNVLLKAGQKITPRLAQKYFGVGL
NNILVTHETLIGKYLSEDLRDPASDEVLAKIGEMITSDMLKVINDLKIKNVNVLVINPQS
GSYIRNTLFADKNQDREAALCDIFRVLRPGEPANIEAAESLFYNLFFDAERYDLSEVGRI
KMNSRLELNISEEVTVLTIDDIKNIVRILVELKDGKGIIDDIDHLGNRRVRSVGELIENQ
FRIGLVRMEKSVIERMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSE
ITHKRRLSALGPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINK
HGFIESPYRRVKNGYVTDEVVYLSAIEEGKYKIGQANSKVDQDGKLQGEFINCRVEGGNF
VMVEPDEVDFIDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTEAPFVGT
GVEGVVAKDSGASVLALHDGIVERVDSNRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNT
CINQKPLVKVGHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIV
KEDVFTSIHIEEFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDIL
VGKVTPKSESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRIFSRRGVEKDQ
RAIAIEKQQIEKLAKDRDDELEIIEHFVFSWLEKLLVGHVIINGPKQITAGQTITTEMLK
GLSKGQLWQITVEDANVMNEIEQIKIHYDEKKYALDKRFTTKVEKLQSGDDLPQGALKVV
KVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIG
QILETHLGWASINLAKKISTLVKEYKDNHIDIEEIKKFLLELYGKDINYILEGSEEEIIS
FCNKVSKGVYFATPVFDGAKVQDVKDMLELAGQDLSGQVKLIDGRTGEYFDRLVTVGHKY
LLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEML
TVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTPSK
NT seq 4125 nt   +upstreamnt  +downstreamnt
atggtttcattaagggataatatagaatcacaacccttgtcacataatagaagaataaga
aagaattttggtcacataaatttagtagcagatataccgaatttgattgaaattcaaaaa
aattcatatgagaaaaattttctacagttaaatattaaagattctgaaagaaaaaacaaa
ggtttacaatctatattaaactcaatttttcctatttcagattcctcaaatattgcaaat
ttagaatttgtcaaatatgaatttgatactccaaaatatgatgtagacgagtgtagtcaa
agaagtttaagttatgcagctcctcttaaagttactttaagattaagtatttgggatata
gacgaagatacaggtactagagaaattaaaggaattaaagagcaagaagtatatatgggc
gatattccattaatgactaaaaatggtacttttattatcaacggtacggaaagagtagtt
gtatcacaaatgcatcgctcaccaggtgtattcttttatcatgatgaaggaaaagtgcac
tcttccggcaagcttttatattctgctcgtgttattccatatagaggatcttggcttgat
ttcgaattcgatgctaaagatattatttattttaggattgatagaaaaaggaagctttat
gctactactttactaagagctattggtatgagtactgaagaaattataaaattttattat
aattcagtaacttataagtttgtaaaaaataaagggtggtctgttaaatttatacctcag
catattactgctcatcgtttaacaagtgatttagtggatgcagatacaggaaatgtttta
ctgaaagcaggacaaaaaattacaccgcgtttggctcaaaaatattttggtgtaggtctt
aataatattttagtaactcatgaaactttaatcggtaaatatctatctgaagatttaaga
gatcctgcaagtgatgaagttttagctaaaattggtgaaatgattacttctgatatgtta
aaagttattaatgatcttaaaattaaaaatgttaacgtattagtaatcaatcctcaatca
ggttcatatataagaaacaccttgttcgctgataaaaatcaggaccgtgaggcagcatta
tgtgacatttttcgagttttaagaccaggcgaacctgctaatattgaagcagcagaaagc
ctattttataatttattctttgatgcagaaagatatgatctttcagaagttgggcgaata
aaaatgaattctaggttagaattgaatatttctgaagaagttacagttctaacaattgat
gatattaaaaatattgtaaggattttagtcgagcttaaagatggtaaaggtattatagat
gatattgaccatttaggtaatagaagggttagatcggttggtgaattgatagaaaatcaa
tttagaataggtttagtacggatggaaaaatctgtaattgaaaggatgtcagcaggtgat
gttgataccgtaatgcctcatgatttagtaaattctaaaattttagtttcggtagtaaaa
gaattttttagtacctcgcaattatcccaatttatggatcaaacaaatccattatctgag
ataactcataaaagaagactttcagcccttgggcctggaggtcttagtcgagatcgagca
ggttttgaggtacgtgacgtacatcctactcattacggtcgtatttgtcctattgaaaca
ccggaaggtcagaatattggtttaataaactctatggctacttatgctagaataaataaa
catggttttatagagagtccgtatagaagagttaaaaatggatatgtaactgatgaggta
gtatatctttctgccattgaggaaggtaaatacaaaatagggcaagcaaattctaaagtt
gatcaagatggaaaactgcaaggagagttcattaattgccgtgttgagggtggaaatttt
gtaatggtagaaccggatgaggtggatttcattgatgtaacgcctatgcaggtagtatcg
gttgcagcttctcttataccttttttagaaaatgatgatgcgaaccgtgctttgatgggg
tcaaatatgcaaaggcaagctgttcctttaattaaaactgaagcaccttttgtaggtact
ggagttgaaggggtagtggctaaagattctggtgcttcggtgcttgcattacatgatggt
attgttgaacgggtagactcaaatagaattgtgattagaactttagaacaaaaagttgat
gggtctccttctgttgatatttataatttattaaaattccaaaaatcgaatcataatact
tgtataaatcaaaagcctttagttaaggtcggtcattatgttaagaaaaatgatattata
gctgatggtcctagtacagataatggtgaaattgctttaggtagaaatgtacttgtggct
ttcttaccttggaacggttataattttgaagattcaattttaatatctgaacgtatagta
aaagaggatgtgtttacatcaattcatattgaagagtttgaagtaatagctagagataca
cgccttggtcctgaagaaattacacgcgatataccgaatgtaagtgaagaagcgttgcgt
catcttgatgaagtcgggataatttatgtaggtgcagaagtaaaagctggtgatatttta
gttggaaaagtaacgccaaaaagtgaatctcctattacccctgaagagaaactactacgt
gctatttttggagaaaaagcttttgatgtaaaagattcatcgctgcatgtaccttctgga
gttagtggcactgtagtagaagtaaggatattttctcgtagaggtgtagaaaaagatcag
agagctattgctattgaaaaacaacaaattgaaaaattagcaaaagacagagatgatgag
ttagaaattattgagcattttgtctttagttggcttgaaaagcttttagtaggacatgtt
attattaatggtcctaagcaaataacagcaggacaaactattactactgaaatgctaaaa
ggtttatctaaaggacagctttggcagattacagtagaagatgcaaatgtaatgaatgaa
atagagcagatcaaaattcattatgatgagaaaaaatatgcgctcgataaaagatttact
actaaggtagagaaattgcaaagcggtgatgatttacctcaaggggctttaaaagtagta
aaagtatttattgccactaagcataaattacagcctggggataagatggcaggaagacac
ggaaataaaggtgttatttcacgtatcgtacctgaagaagatatgccatttttagaagat
ggaactgtcgtagatatagtgcttaatcctctaggtctcccatcccgtatgaatatagga
cagattttagaaacccatcttggatgggcatcaataaatttagcaaaaaaaatatctacc
ttagtaaaggaatataaagataatcatatagatattgaggaaattaagaaattcttactt
gagctgtacggcaaggatattaattatatccttgaaggatcagaagaagaaattatctct
ttctgtaataaagtaagtaaaggtgtatattttgcaactcctgtatttgatggtgcaaaa
gttcaagatgttaaagatatgttggaacttgctggccaagatctttcaggacaagtaaaa
ttaattgatggtagaactggtgaatatttcgatcgtttagtaactgtaggacacaaatat
ttgctaaaattacatcacttagtcgataataaaattcactctcgttctataggaccttat
agcttagtaacacagcaaccgcttggaggtaagtctcattttggtgggcaacgttttggc
gaaatggaatgttgggcattacaagcttatggtgcagcttatacgttacaggaaatgtta
actgttaagtcagatgatgtaaacggtaggatcaaaacttatgattctatagtacgtggt
gaaaataattttgaatcaggcattcctgaatcctttaatgttatgataaaagaatttaga
tctttatgtctcaacgtaaagcttgaagtaactccaagtaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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