KEGG   Rhodopseudomonas palustris DX-1: Rpdx1_2166
Entry
Rpdx1_2166        CDS       T01381                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rpx  Rhodopseudomonas palustris DX-1
Pathway
rpx03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rpx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Rpdx1_2166
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rpx03021]
    Rpdx1_2166
   03400 DNA repair and recombination proteins [BR:rpx03400]
    Rpdx1_2166
Enzymes [BR:rpx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Rpdx1_2166
Transcription machinery [BR:rpx03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Rpdx1_2166
DNA repair and recombination proteins [BR:rpx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Rpdx1_2166
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RPOC_hybrid RnfC_N
Other DBs
NCBI-ProteinID: ADU43762
UniProt: E6VBU2
Position
2331311..2335513
AA seq 1400 aa
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGQLLDMTLKDLERILYFEYYVVLEPGLTDLKERQLLSEEEYLRAQDQYGQDSFTA
MIGAEAIRELLKGLELEKIDAQLRAEMAETDSDIKHKKLAKRLKIVEAFRYSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIMREGLPGEGKVFGDLAELEHALY
SKVIHLHTKIRYRWHWTNEEGQETVRLLETTAGRILLGQVLPKSPKLPFDVINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFFNAFKAGISFGKDDMVVPGSKWKIVDSTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKEMMKEISAVRKAPDGSEQQVNSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQADCGTSLGIKMRAIVDAGTVVASLGSRILGRTA
GEDVRDPATNEIIVKRGDLMEERDVEAIHQAGVQEVKIRSALTCELVNGICGKCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQINEQSVIESNFDGKIVIKNRAI
ARNGEGHNVAMVRNMVIAIVDPDGTERATHRIQYGARVHVDEGDMVKRGQRIAEWDPYTR
PILTEVEGTIDFEDLIEDQSISETLDESTGIAKRIVIDWRSSRGGADLRPAIVIKGKDGK
VLKLARGGDARYMLSVDAILSVDVGAQVKPGDILARISTESAKTRDITGGLPRVAELFEA
RRPKDAAIIAEIAGTIRFGRDYKNKRRLSIEPLDKNEEAREYLIPKGKHIHLQDGDVVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKIEI
TDQGDTDMISGEQVDKIEFNAVNAKAVEEGKKPATGNPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVAMKRDRLILDEREKQ
AAIVPAAAPEAEPLSLPPVE
NT seq 4203 nt   +upstreamnt  +downstreamnt
atgaaccaagagattatgaatctgttcaatccgacgacgccggctcaggtcttcgaccag
atccggatttcgatcgcgtcgccggagaagattctgtcgtggtcttacggcgagatcaag
aagccggaaaccatcaactaccgcaccttcaagcccgagcgcgacggcctgttctgcgcc
cgcatcttcgggccgatcaaggattacgagtgcttgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaagtgacgctgtcgcgcgtccgtcgc
gagcgcatgggccacatcgagctggccgcgccggtcgcccacatctggttcctgaagtcc
ctgccgtcgcggatcgggcaactgctcgacatgacgctgaaggacctcgagcggattctg
tacttcgaatactacgtcgtgctggagccgggcctcaccgacctcaaggagcgtcagctc
ctgtcggaggaggaatacctgcgcgcccaggatcagtacggccaggattcgttcaccgcc
atgatcggcgccgaggcgatccgcgaactgctgaagggtctcgagctcgaaaagatcgac
gcgcagctccgcgccgagatggccgagacggattcggacatcaagcacaagaagctcgcc
aagcgcctgaagatcgtcgaagcgttccgctattccggcaacaagccggagtggatgatc
ctcacggtcgtgccggtgatcccgccggacctgcgtccgctggtgccgctcgacggcggc
cggttcgcgacctcggacctcaacgacctgtatcgccgcgtcatcaaccgtaacaaccgc
ctgaagcggctgatggagctgcgcgcgccggacatcatcatccgcaacgaaaagcgcatg
ctgcaggaggccgtggacgcgctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgcccgctgaagtcgctcgccgacatgctgaagggcaagcagggccggttc
cgtcagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
ccggaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctattcgcggctcgatgccaagggtctgtcgaccaccgtcaagcaggccaag
aagctggtcgaaaaggagcggccggaggtttgggacatcctcgacgaggtgatccgcgaa
catccggtgctgctgaaccgcgcgccgaccctgcatcgcctcggcattcaggcgttcgag
ccggtgctgatcgagggcaaggcgatccagctccatccgctggtttgctcggcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctc
gaagcgcgcgtgctgatgatgtcgaccaacaacatcctgcatccggcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggcctgtactacctgtcgatcatgcgggaa
gggctgccgggcgagggcaaggtgttcggcgatctcgccgagctcgagcacgcgctgtat
tcgaaggtcatccacctccacaccaagatcaggtatcgctggcactggaccaacgaggag
ggccaggagacggtccgtctgctggagaccaccgccggccgcatcctgctcggccaggtg
ctgccgaagtcgccgaagctgccgttcgacgtcatcaacaagctgatgaccaagcgcgag
atctccggcgtcatcgatcaggtctatcgccactgcggtcagaaggagacggtgatcttc
tgcgaccggatcatggcgctcggcttcttcaacgcgttcaaggccggcatctcgttcggc
aaggacgacatggtcgtgccgggctcgaagtggaagatcgtcgactcgacccgcaccctg
gcgaaggatttcgagcagcagtacaacgacggtctgatcacccacggcgagaagtacaac
aaggtggtcgacgcctggtcgaaggccaccgaagaaatcgccaaggagatgatgaaggag
atctccgcggttcggaaggcgccggacggctccgaacagcaggtcaactcgatctacatg
atggcccactccggtgcgcgtggttcgcccgcgcagatgcgtcagctcgccggtatgcgc
ggcctgatggccaagccgtcgggtgagatcatcgagacgccgatcatctccaacttcaag
gaaggtctgtcggttctcgagtacttcaactcgacccacggcgcccgtaagggtctggcc
gacaccgcgctgaagaccgcgaactcgggttacctgacccggcgtctggtcgacgtggcg
caggactgcatcatcacgcaggccgactgtggcacctcgctcggcatcaagatgcgggcg
atcgtcgacgccggcaccgtggtcgcttcgctgggcagccgtatcctcggccgcaccgcg
ggcgaggacgtgcgcgacccggccaccaacgagatcatcgtcaagcgcggcgatctgatg
gaggagcgggacgtcgaggcgatccaccaggccggcgtgcaggaagtgaagatccgctcg
gcgctgacctgcgagctggtcaacggcatctgcggcaagtgctacgggcgcgatctcgcc
cgcggcaccccggtcaaccacggcgaggcggtcggcgtgatcgcggcgcagtcgatcggc
gagccgggcacccagctcacgatgcgtaccttccacatcggcggcgcggcgcagatcaac
gagcagtcggtgatcgagtcgaacttcgacggcaagatcgtgatcaagaaccgcgccatc
gcccgcaacggcgaaggccacaatgtcgcgatggtccgcaacatggtgatcgcgatcgtc
gatccggacggcaccgagcgtgcgacccatcgcatccagtacggcgcgcgcgtgcacgtc
gacgagggcgacatggtcaagcgtggccagcgcatcgccgagtgggatccgtacacccgg
ccgatcctgaccgaggtcgagggtaccatcgacttcgaggatctgatcgaggatcagtcg
atctccgaaacgctcgacgagtcgaccggtatcgccaagcgtatcgtcatcgactggcgt
tcgagccgcggcggcgcggacctgcgtccggcgatcgtgatcaagggcaaggacggcaag
gtgctgaagctggcgcgcggcggcgacgcccgttacatgctgtcggtcgacgccattctg
tcggtcgacgtcggcgcccaggtcaagcccggcgacatcctggcgcgtatctcgaccgag
agcgccaagacccgcgacatcaccggcggtctgccgcgggtggcggagctgttcgaagcg
cggcggccgaaggatgcggcgatcatcgccgagatcgccggcaccatccggttcggtcgc
gactacaagaacaagcgccggctctcgatcgagccgctcgacaagaacgaggaagcgcgc
gagtacctgatcccgaagggcaagcacatccacttgcaggacggcgacgtcgtcgaaaag
ggcgacttcatcgtcgagggcaatccggcgccgcacgacatcctggcgatcaagggcatc
gaggaactcgcggcctatctggtcaacgaaatccaggaggtctatcgactccagggcgtg
ttgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagatcgagatc
accgaccagggcgacaccgacatgatctcgggcgagcaggtcgacaagatcgagttcaac
gcggtcaacgccaaggcggtcgaggagggcaagaagcccgccaccggcaacccggtgctg
ctcggcatcaccaaggcgtcgctgcagacccggtcgttcttctcggcggcttcgttccag
gaaaccacgagggtgctcaccgaagccgcggtcaacggcaaggtcgacccgctggaaggt
ctcaaggagaacgtcatcgtcggccggctgatcccggcgggcaccggtgcctcgatggcc
aagatccgcgaagtggcgatgaagcgcgaccggctgatcctcgacgaacgcgagaagcag
gcggcgatcgttccggccgccgcgccggaagccgaaccgctgtcgctgccgccggtagag
tga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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