KEGG T05315: C1M55

Rhodococcus qingshengii: C1M55_30685

Entry

C1M55_30685       CDS       T05315

Name

(GenBank) RNA polymerase sigma factor SigM

K03088

RNA polymerase sigma-70 factor, ECF subfamily

Organism

rqi Rhodococcus qingshengii

Brite

KEGG Orthology (KO) [BR:rqi00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rqi03021]
    C1M55_30685
Transcription machinery [BR:rqi03021]
Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     C1M55_30685

SSDB

Motif

Pfam:

Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF PNP_UDP_1 HTH_23 HTH_28 Rv2175c_wHTH HTH_30 HTH_59 HTH_17 CSTF_C RWP-RK Terminase_5 DUF134 HTH_24

Other DBs

NCBI-ProteinID:

AUS35053

UniProt:

A0AA34W415

Position

1:6502655..6503281

AA seq 208 aa
MHSYRGGTGGGAGKFESRSFENKNLEATDFELLTAHVEGDQHAFRELLTRHQDHLWHVAR
RTSYSDEDAADALQEGLLSAHRKAAKFRGDAAVRSWLHTIVVNACLDRIRRNKSRAGFSL
SSENAEEPRDHRDYAATVDMSLTVEQALASLPPEQRAAVVAVDVEGYPVAEAAERLGVPV
GTVKSRCARARKRLAAQLEDFREGGNHS

NT seq 627 nt +upstreamnt +downstreamnt
gtgcacagttatcgggggggcaccgggggcggagccggaaaattcgaatccagaagtttc
gagaacaagaatctcgaggcgacggatttcgaattgttgactgctcatgtcgagggcgat
cagcatgcgttccgtgaactactgaccaggcatcaggatcatctatggcacgttgcccgg
cgtacgagctactcggacgaggatgcggccgacgctctccaggagggtctgctgtccgcg
caccgcaaggccgcgaagttccgcggcgacgcggcggtgcgtagttggctccacaccatc
gtggtcaatgcctgcctcgaccggatccgacgcaacaaatcacgggcggggttctctctg
tcttcggagaacgcggaggaaccccgcgatcaccgcgactatgcggcgacagtggacatg
agcctgaccgtcgaacaggcactggcatcgctgccgcctgagcagcgtgctgccgtcgtc
gccgtcgatgtcgaggggtatccggtagccgaggccgccgagaggttgggagtgcccgta
gggaccgtgaagagtcgctgcgcccgcgcgcgcaagcgtctcgccgcccagttggaggac
tttcgcgaaggcgggaaccattcgtga

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (23)   

Download RDF

DBGET integrated database retrieval system