KEGG   Rickettsia rhipicephali: MCC_06645
Entry
MCC_06645         CDS       T01786                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rre  Rickettsia rhipicephali
Pathway
rre03030  DNA replication
rre03410  Base excision repair
rre03420  Nucleotide excision repair
rre03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MCC_06645 (ligA)
   03410 Base excision repair
    MCC_06645 (ligA)
   03420 Nucleotide excision repair
    MCC_06645 (ligA)
   03430 Mismatch repair
    MCC_06645 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rre03032]
    MCC_06645 (ligA)
   03400 DNA repair and recombination proteins [BR:rre03400]
    MCC_06645 (ligA)
Enzymes [BR:rre01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     MCC_06645 (ligA)
DNA replication proteins [BR:rre03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     MCC_06645 (ligA)
DNA repair and recombination proteins [BR:rre03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     MCC_06645 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MCC_06645 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     MCC_06645 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      MCC_06645 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT
Other DBs
NCBI-ProteinID: AFC72809
UniProt: A0AA85YS86
Position
complement(1118551..1120620)
AA seq 689 aa
MQNIDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHL
ILENSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKNFLRLNEFVPIFC
EPKIDGLSFSAVYKNGVLTTGATRGDGYVGEDITANIKTIKNFPHKIDNVPEFLEVRGEI
YIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTEQNL
ASSQDQLLTKLKECGLNINEISKLASSEEEIFAFYEYLKTNREDLPYEIDGVVYKLNDFA
LQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSR
ATLHNFQEIARKDVRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTATFDTPLFCLSCNSKL
HYMPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDKGLISNPLDIF
FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRHIGEQNAKLLA
REFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGEI
LNIEDYKETREQSSLTDKIVVFTGSLPTISRAEAKATAEKLGAKVTAGVSSNTDLVVAGV
DAGSKLKKAKELNIKIIDEEEWLTLIKNV
NT seq 2070 nt   +upstreamnt  +downstreamnt
atgcaaaatattgatttaatatctgaagaggaagcacaaaaattactagaagaactcgct
gataaaatagcagcgtataaccatgcttattatatagaagataatcctttagtttctgat
agcgagtatgatcagctatttaataccaatctcaagttagaacaaaaatttcctcattta
attttagaaaatagtcctagcaaaaaagtaggggctaaaatagcaaataaatttgctaaa
gttacgcatcaagtgcctatgctatctctcagtaatgcttttgatgagcaagatgtgaga
gattttgtagaccgtataaaaaatttcttacgccttaatgagtttgttcctatcttttgt
gaacctaaaatagacggtttgtctttttctgctgtttataaaaacggggtgcttacaacg
ggagctacaagaggtgacggatatgtcggtgaagatataacagcaaatattaaaacaatc
aaaaattttcctcataaaatagataatgttccggagtttttagaagtacgaggggaaatt
tatattgaaaaacaagattttttaaatctaaataaagaacaagaagagcagggcaaggat
aaatttgccaatcctcgtaatgctgctgccggatcacttcgtcagcttgatgcttctatt
acggctaaaagaccgctcaaatattttgtatattcaggaggggtaactgaacagaatctt
gcttcttcacaagatcaattacttacaaaattaaaagaatgcggcttgaacattaatgaa
atatctaaacttgcgagttctgaagaagaaattttcgccttttacgaatatctcaaaaca
aatagagaagatttaccttatgaaattgatggagtagtatataaactaaatgattttgca
ctgcaaaatagaatgggctttattgcacgaagtccacgctttgctatcgctcataaattt
cctgcaataataggacaaacaaagttactttctattactgtacaggttggtagaactggt
acgttaacgccggtagccgaacttgaacccatagaaataggcggggtaactgttagcaga
gcaacattacataatttccaagaaattgcacgaaaagatgtgcgcattaaggattatgta
ttcctgcaacgtgctggtgacgttattcctaaaatcatgggagttgattttgataaacgt
cctaatgatacagcaacgtttgatactcctttattttgtctgtcatgtaattctaagttg
cattacatgcctgaagatattattatacgctgtgataatggccttaactgtcctgctcag
aattatgagcgtatccgtcattttgtatcgaaaaatgctatggatattgaggggcttggg
cgtaagcaagttgaatttttaatagataagggattgattagtaatcctttagatattttc
tttttaaaagaaaaaaatgactctagcttagcaaaacttgaaaatatggatggatggggt
aaaaaatcagtagaaaatctttttaaaaatatagaaaaatcaaaaaacgttagtttgcca
agatttatatatgcattaggcataaggcatatcggtgaacaaaatgctaaattacttgct
agagaatttggcagctataataattttatagctcaaatggaattgcttagaacaaatgag
cctgatatttatcaaaaactaaacaatttagaaggaatcggtgataagattttagtagat
attattgatttttttgatgttaaagaaaatattgagcttatcaaaaaacttggtgaaata
ttaaatattgaagattataaagagactagagaacagagtagtttaacggacaagatagta
gtatttaccggtagtttaccgactatatctagagcggaagctaaagcaacggctgagaaa
cttggggctaaagttacagctggcgtatcatcgaacacggatttagttgtagccggtgtt
gatgcaggcagtaaacttaaaaaagctaaagagcttaatattaaaattattgatgaagaa
gaatggcttacgcttataaaaaatgtttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (26)   

Download RDF
DBGET integrated database retrieval system