KEGG   Rhodospirillum rubrum F11: F11_12375
Entry
F11_12375         CDS       T02006                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rrf  Rhodospirillum rubrum F11
Pathway
rrf03410  Base excision repair
rrf03430  Mismatch repair
rrf03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rrf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    F11_12375
   03430 Mismatch repair
    F11_12375
   03440 Homologous recombination
    F11_12375
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rrf03400]
    F11_12375
DNA repair and recombination proteins [BR:rrf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     F11_12375
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     F11_12375
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      F11_12375
SSDB
Motif
Pfam: DHH RecJ_OB DHHA1 Peripla_BP_6
Other DBs
NCBI-ProteinID: AEO48939
Position
complement(2806942..2808762)
AA seq 606 aa
MTDILTPAAPPALPTRDAAFLGVERSRGGRRWVLRPGDERQALAISQRLGVPEVVGRVLT
GRGVQVEEADGFLTPTLRALLPDPGHLLDMDKAVARLSKAVRDKETIAIFGDYDVDGATS
TALMHRFFRSLGARVLIHIPDRVLEGYGPNAPALEALAAKGARVVLTVDCGISAFDALRA
AKAAGLDVVVCDHHEARTELPAAVAVVNPKRLDEASPHTHLAAVGVAFLMAVAINRDLRD
SGWFAAEQRPPPDLMALLDLVALGTVCDMVPLIGVNRALVQQGLKVIAKRTNPGIAALAE
VSGVRDRVDAFHLGFMLGPRVNAGGRVGQAGMGAALLSSEDPLECLDFARQLDAFNGARK
EIEAAVLHQAIEQVEAAPANDLPLVFASGTDWHPGVVGIVASRLKERYGLPACAVALDGG
LAKGSGRSVGGVDLGRVVIAAREAGVLEAGGGHAMAAGFSLRTDRLEEFRQFLGERLKDQ
VAALALVASLDLDGVLDVRGANAQLVRALSQAGPYGSGNPEPRFAVANARVGKVDVVGMG
HVRCFLNGPSGGSLKAMAFKAADSEIGHALLTAHGASLHVAGTLRLDSFQGRETVVLVVD
DVAPCS
NT seq 1821 nt   +upstreamnt  +downstreamnt
atgaccgatattctgactccggcggccccgcccgcccttccgacccgcgatgccgcattt
ctcggggtcgagcgttcgcgcggcggccggcgatgggtcttgcgcccgggcgatgagcga
caggccttggcgatcagccagcgcctgggggttcccgaggttgttggtcgggttctgacc
ggtcgcggcgtccaggtcgaggaggccgacggttttctcacgccgacgttgcgcgccctg
ctgcccgatcccggccatctgctggatatggacaaggcggtggcccgcctgagcaaggcg
gtgcgcgacaaggagacgatcgccatcttcggcgattacgacgtcgacggggcgacctcg
acggccctgatgcaccgcttcttccgcagcctgggcgcccgggtgctgatccatattccc
gaccgggtgcttgagggctatggccccaatgctccggccctggaggccttggccgccaag
ggggcgcgggtggttcttacggtcgattgcggcatcagcgcctttgacgccctgcgcgcg
gccaaggcggcggggcttgatgtcgttgtttgcgaccaccacgaggcgcgcaccgaactg
cccgccgccgtcgccgtggtcaatcccaagcgccttgatgaggccagcccccatacccac
ctcgccgccgttggcgtggccttcctgatggcggtggcgatcaaccgcgatctgcgcgac
agcggctggttcgccgccgagcagcggccgccgcccgatctgatggccttgctcgatctg
gtggcgcttggcacggtttgcgacatggtgccgctgatcggcgtcaatcgcgccctggtc
caacaggggctgaaggtgatcgccaagcgcaccaatcccggcatcgccgccctggccgag
gtgtcgggcgtgcgcgaccgggtcgacgcctttcatctgggattcatgctggggccgcgg
gtcaatgccggcggccgggtggggcaggccggcatgggcgcggccctgttgtcgagcgag
gatccgctggaatgcctggatttcgcccgccagcttgacgccttcaatggcgcgcgcaag
gaaatcgaggcggcggtcctgcatcaggcgatcgaacaggtggaagccgcccctgccaat
gatctgccgctggttttcgccagcggcaccgattggcatcccggcgtcgtcggcatcgtc
gccagccggctcaaggaacgctatggcttgccggcctgcgccgtcgccctggatggcgga
ctggccaaggggtcgggccgctcggtcggcggcgtcgatcttggccgggtggtgatcgcc
gcccgcgaggccggcgtgcttgaggccgggggcgggcacgccatggccgccggtttcagc
ttgcgcaccgatcgcctggaggagtttcgccagttcctgggcgagcggctgaaggatcag
gtggcggcgctcgccctggtcgcctcgctcgatctcgatggggttctcgatgtgcgcggc
gccaatgcccaattggtgcgcgccctgtcgcaggccggcccctatggctcgggcaatccc
gaaccgcgcttcgccgtcgccaatgcccgcgtcggcaaggtcgatgtcgtcggcatgggc
catgtccgctgtttcctcaacggtccctcggggggctcgttgaaggcgatggctttcaag
gccgccgattccgaaatcggccacgccctgctcaccgcccatggcgcctcgctgcatgtg
gcgggaaccctgcgcctcgatagcttccaggggcgggagaccgtcgtcctggtggttgac
gacgtcgccccctgctcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system