KEGG   Rhodococcus rhodochrous: 4535765_00898
Entry
4535765_00898     CDS       T05521                                 
Name
(GenBank) DNA repair helicase
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
rrt  Rhodococcus rhodochrous
Pathway
rrt03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rrt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    4535765_00898
  09124 Replication and repair
   03420 Nucleotide excision repair
    4535765_00898
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rrt03021]
    4535765_00898
   03400 DNA repair and recombination proteins [BR:rrt03400]
    4535765_00898
Enzymes [BR:rrt01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     4535765_00898
Transcription machinery [BR:rrt03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     4535765_00898
DNA repair and recombination proteins [BR:rrt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     4535765_00898
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom
Other DBs
NCBI-ProteinID: SNV13129
Position
1:complement(952636..954294)
AA seq 552 aa
MADGPLIVQSDKTVLLEVDHERANEARQAIAPFAELERAPEHIHTYRVTPLALWNARAAG
HDAEQVVDALVSHSRFAVPQALLVDIVDTMGRYGRLQLVKNPAHGLTLVSFDRAVLAEVL
RNKKIAPMLGARIDDDTVIVHPSERGRVKQMLLKIGWPAEDLAGYVDGEAHSISLDFETN
PWHLRDYQELAADSFWSGGSGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWK
RELIARTSLTEDEIGEYSGEKKEIRPVTIATYQVITRKSKGEYRNLELFDSRDWGLMIYD
EVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKDIEAQGWI
APADCVEVRVTLTDAERMAYAVAEPEERYKLCSTARTKIPVVESILEQHKDAPTLIIGAY
IDQLDELGEALDAPVIKGSTKTKEREALFDRFRSGELKVLVVSKVANFSIDLPEASVAIQ
VSGTFGSRQEEAQRLGRLLRPKHDGGQAHFYSVVSRDTLDAEYAAHRQRFLAEQGYAYRI
TDADDLLGPQIG
NT seq 1659 nt   +upstreamnt  +downstreamnt
gtggccgacggaccgctcatcgtccagtccgacaagaccgtgctcctcgaggtcgatcac
gaacgggcgaacgaggcgcggcaggcgatcgcacccttcgccgagctcgaacgcgccccc
gagcacatccacacctaccgggtgacgccgctggcactgtggaacgcccgtgccgccggt
cacgacgccgagcaggtcgtcgacgcactggtctcgcattcccggttcgccgtcccgcag
gcgctgctcgtcgacatcgtcgacaccatgggccgctacgggcgcctccagctggtcaag
aaccccgcacacggcctgaccctggtcagcttcgatcgggcggtgctcgccgaggtcctg
cggaacaagaagatcgcaccgatgctcggtgcccgtatcgacgacgacaccgtgatcgtg
catccgagcgagcgcggacgcgtcaagcagatgctgctgaagatcggctggccggccgag
gacctcgcagggtatgtcgacggcgaggcccattcgatctcgctggacttcgagacgaac
ccctggcacctgcgcgactaccaggaactggcggccgactcgttctggtcgggcggctcg
ggtgtcgtggtgctgccgtgcggtgccggcaagacgatggtcggtgccgccgcgatggcg
aaggccggcgcgacgacgctcatcctcgtgacgaacacggtcgccgggcgccagtggaag
cgcgagttgattgcgcgcacctccctcaccgaggacgagatcggcgagtactcgggtgag
aagaaggagatccgtccggtcaccatcgccacctaccaggtgatcacccgcaagtcgaag
ggcgaataccgcaatctcgagttgttcgactcccgcgactggggattgatgatctacgac
gaggtgcacctgctgccggcgccggtcttccggatgaccgccgatctgcagtcccgccgc
cgcctcggcctcaccgcgacgctcgtgcgtgaggacgggcgcgaaggcgacgtcttctcg
ctcatcggcccgaagaggttcgacgcgccgtggaaggacatcgaggcccagggctggatc
gcgccggccgactgtgtggaggtccgtgtgaccctcaccgacgccgagcgcatggcgtac
gcggtggccgagcccgaggagcggtacaagctgtgctcgaccgcgcgcaccaagattccg
gtggtcgagtcgatcctcgagcagcacaaggacgccccgacactgatcatcggcgcctac
atcgatcagctcgacgagctcggtgaagcgctcgacgccccggtgatcaagggttcgacg
aagacgaaggaacgcgaggcgctgttcgaccggttccggtcgggcgagttgaaggtgctc
gtcgtgtcgaaggtcgcgaacttctccatcgacctgccggaggcctcggtcgcgatccag
gtgtcgggcaccttcggttcgcgtcaggaggaggcccagcgtctcggacgtctgctgcgt
ccgaagcacgacggcgggcaggcccacttctactccgtggtctcgcgcgacacgctcgac
gccgagtacgccgcgcaccgccagcggttcctcgccgagcagggttacgcgtaccggatc
accgacgccgacgacctgctcggaccgcagatcggctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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