KEGG   Rhodospirillum rubrum ATCC 11170: Rru_A0939
Entry
Rru_A0939         CDS       T00310                                 
Name
(GenBank) DNA ligase (NAD+)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rru  Rhodospirillum rubrum ATCC 11170
Pathway
rru03030  DNA replication
rru03410  Base excision repair
rru03420  Nucleotide excision repair
rru03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rru00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Rru_A0939
   03410 Base excision repair
    Rru_A0939
   03420 Nucleotide excision repair
    Rru_A0939
   03430 Mismatch repair
    Rru_A0939
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rru03032]
    Rru_A0939
   03400 DNA repair and recombination proteins [BR:rru03400]
    Rru_A0939
Enzymes [BR:rru01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Rru_A0939
DNA replication proteins [BR:rru03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Rru_A0939
DNA repair and recombination proteins [BR:rru03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Rru_A0939
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Rru_A0939
   MMR (mismatch excision repair)
    DNA ligase
     Rru_A0939
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Rru_A0939
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT DZR_2 zf-NADH-PPase
Other DBs
NCBI-ProteinID: ABC21740
UniProt: Q2RVV5
Position
complement(1118665..1120761)
AA seq 698 aa
MIPVADLTEAEAARELERLAAEIARHDRLYHQQDAPEITDGEYDALVRRNNEIEAAFPEL
VRGDSPSAHVGAAPAEGFAKVTHALPMLSLGNVFSDDEAREFDQRIRRFLSLDGETTISY
VAEPKIDGLSFSARYENGVYRRAATRGDGTTGEDITANLATLTDLPQRLTGDGPVPEVLE
VRGEVFMTKADFRALNQRQIDAGAKPFANPRNAAAGSLRQLDPEITRSRSLSLFAYASGE
VKGLEVESHHAFLERLKTWGFPVNPQTRPCQGVEDLIEATHALALQRAALDYDIDGVVYK
VDRVDWQKRLGFVSRAPRWAIARKFPAERAQTTVKAIQIQVGRTGTLTPVAILEPVTVGG
VVVGRATLHNEDEIARKDVRIGDMVTIQRAGDVIPQVVEVLLDQRPADSAPFVFPETCPV
CGSHAVRQEGEVARRCAGGLICSAQAVERLKHFVSRDAFDIEGLGGKHIETFHNEGLITQ
PADIFALEAKDNEPGALQHLRSREGWGPKSAENLFKAITARKTIPLDRFIYALGIRQVGQ
ATARLLAGHYASFAAWRKAMDEAQTEGSEAFADLQNIESIGPSVARDLVAFFGEEHNRAA
LDALIDAGVEVLDFARPQAAGDSPLAGKTVVFTGTLDTMSRGEAKARALALGAKVTGSVS
AKTDYVVVGADAGSKEKKARELGLTVLSEAEFRAMSGG
NT seq 2097 nt   +upstreamnt  +downstreamnt
atgattcccgtcgccgatctcaccgaggccgaggccgcccgcgaactcgaacggcttgcc
gccgagatcgcccgccacgaccggctctatcaccagcaggacgcgccggaaatcaccgac
ggcgagtacgacgccctggtacggcgcaataacgagatcgaggccgccttccccgaactg
gtgcgcggcgacagcccctcggcccatgtcggcgccgctccggccgaaggcttcgccaag
gtcacccacgccctgccgatgctgtcgctgggcaatgtgttcagcgacgacgaggcccgc
gagttcgaccagcgcatccgccgcttcctcagcctggatggcgaaacgacgatcagctat
gtcgccgagcccaagatcgatggcctgtcgttttcggcgcgctacgagaacggcgtctat
cgccgcgccgccacccggggtgatggcaccaccggcgaggacatcaccgccaatctggcg
accctgaccgatctgccccagcgcctgacaggcgacgggcctgtgcccgaggtgctggag
gtgcgcggcgaggtgttcatgaccaaggccgatttccgcgccctcaaccaacgccagatc
gacgccggcgccaagcccttcgccaatccgcgcaatgcggcggccgggtcgctgcgccag
cttgatcccgaaatcacccgctcgcgctcgttgagcctgttcgcctatgcctctggcgag
gtcaaggggctggaggtggagagccatcacgcctttctagagcgcctgaaaacctggggg
ttcccggtcaatccccaaacccgcccctgccagggggtggaagacctgatcgaagccacc
cacgcgttggctttgcaacgggcggcgctggattatgatatcgacggcgtcgtctataag
gtcgaccgcgtcgattggcaaaagcgcctgggcttcgtcagccgcgccccgcgctgggcg
atcgcccgcaaattccccgccgagcgcgcccaaaccaccgtcaaggccatccagatccag
gtcggccgcaccggcaccctgaccccggtcgccattcttgaaccggtcaccgtcggcggc
gtcgtcgttggccgggcgacgctgcataacgaggacgagatcgcccgcaaggatgtgcgc
atcggcgatatggtcaccatccagcgcgccggcgatgtcattccccaggtggtcgaggtt
ctgctcgaccagcgtccggccgatagcgcgccctttgtcttccccgagacctgcccggtc
tgcggaagccacgcggtgcgccaagagggcgaggtcgcccggcgctgcgccggcgggctg
atctgctcggcccaggcagtcgagcgcctcaagcatttcgtctcgcgcgacgccttcgat
atcgaagggctgggcggcaagcatatcgagaccttccataatgagggcctgatcacccaa
ccggccgatattttcgcgctggaagccaaggacaacgaacccggcgccttgcagcacctg
cgctcgcgcgagggctgggggccgaaatcggcggaaaacctgttcaaggcgatcaccgcc
cgcaagaccatccccttggaccgtttcatctacgccctgggcatccgtcaggttggtcag
gccaccgcccgcctgctcgccggtcattacgccagcttcgccgcctggcgcaaggcgatg
gacgaggcgcaaaccgaaggctccgaagccttcgccgatcttcaaaacatcgaaagcatc
ggcccctcggtcgcccgcgaccttgtcgccttttttggcgaagagcataaccgcgcggcc
ttggacgccctgatcgacgccggggtcgaggttcttgatttcgcccgcccccaggcggcc
ggcgacagcccgctggccggcaagaccgtggttttcaccggcacccttgataccatgagc
cggggcgaagccaaggcccgcgccctggcgctcggcgccaaggtcaccggctcggtctcg
gccaagaccgattacgtggtggtcggagcggacgccggatccaaggagaagaaggcccgc
gaactcggcctgaccgtcctcagcgaggccgagttccgggcgatgagcggtggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (64)   

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