KEGG   Renibacterium salmoninarum: RSal33209_2185
Entry
RSal33209_2185    CDS       T00641                                 
Name
(GenBank) DNA-directed RNA polymerase beta' chain
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rsa  Renibacterium salmoninarum
Pathway
rsa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RSal33209_2185
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsa03021]
    RSal33209_2185
   03400 DNA repair and recombination proteins [BR:rsa03400]
    RSal33209_2185
Enzymes [BR:rsa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RSal33209_2185
Transcription machinery [BR:rsa03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RSal33209_2185
DNA repair and recombination proteins [BR:rsa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RSal33209_2185
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 DUF4407
Other DBs
NCBI-ProteinID: ABY23917
UniProt: A9WSX9
Position
complement(1926222..1930121)
AA seq 1299 aa
MSSEATFGSMQIGLATASDIRDWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPSRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDDEMRHADLPNLQAEHDLEKKQLVDTRDSDIAGIARDLEGE
LTKLEGEGAKAADKKKARDSADRQMANIRKRADADIDRLDQVWDRFKGLKVTDLEGDEGL
YRELRDRYGLYFEGSMGAEAIKKRLENFDMAAESESLRDTIQNGKGQRKTRALKRLKVVN
AFLTTKNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEIITEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARVLMLSSNNILKPSDGRPVTLPSQDMIIGLYHLTTKRVGSAGEGR
IFTSPSEAIMAHDAGVLHLNSTVKIRLDNFVPGEDWEAPAGWEAGQPAIVETSLGQVLFN
DTLPADYPWVEKVADKGQLSEIVNDLAERYPKVVVAATLDNLKDAGFYWATRSGVTVAIS
DIEVPAEKPAILAGYEVKAAKVQSQFEKGLIADDERRQELIDIWNQATNDVADAMRKSLS
ASNTINRMVSSGARGNWMQVRQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVREDDCGTEYGLTLPIAVADSNGELVMHE
EVENSVYARTLATEVTDAKGKVLAAAGADVGDVLIAELFAAGVTEVKVRSVLTCESAVGT
CAQCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAVSASRGEDITQGLP
RIQELFEARTPKGVAPIAEAAGRVNIEETERQMRLVLTPDDGTEEIAYPILRRARLLVAD
GDRVEVGQKLVVGAVDPKQVLRVLGPRAAQKHLVEEVQRVYRSQGVGIHDKHVEVIVRQM
LRRVTVIESGDSNLLPGELAERGRFETENRRVVSEGQKPASGRNELMGITKASLATESWL
SAASFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLPRYTDITVEPTEEAKAN
LFTAPSAFSDFDYAGVGGDLAPEFQAIPLDDYDLGSEYR
NT seq 3900 nt   +upstreamnt  +downstreamnt
atgtccagcgaagctaccttcggcagcatgcagatcggcctagccaccgcgagtgatatt
cgcgattggtctttcggcgaggtcaagaagccggaaactatcaactaccgcacgctcaag
ccggaaaaggacggactcttctgtgagaagatcttcggcccgtcccgcgactgggagtgc
tactgcggcaaatacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtaacccgtgccaaggtccgccgcgagcggatgggccacattgagcttgccgctccc
gtaacgcacatctggtacttcaagggcgttccgtcgcgcttgggctacctgctcgatttg
gctccgaaagacctcgaaaaggtcatctacttcgcggcctacatgatcaccagcgttgac
gacgaaatgcgtcacgccgatttgccgaacctgcaggccgagcacgacctggagaagaag
cagcttgttgatacccgcgactcggatattgctggcattgcccgcgacctcgaaggcgag
ctgacaaagctcgaaggcgaaggcgcgaaggctgctgacaagaagaaggctcgcgattcg
gctgatcgccagatggcgaacatccgcaagcgtgccgatgctgatatcgatcgtcttgac
caggtttgggatcgcttcaagggtcttaaagtcaccgaccttgaaggcgacgaaggtctc
taccgcgagctgcgtgaccgttacggtctgtacttcgaaggctcgatgggtgctgaggca
atcaagaagcgccttgagaactttgacatggcagccgagtcggagtcgctgcgcgacacc
atccagaacggtaagggccagcgtaagacccgcgccctgaagcgtctcaaggttgtcaac
gcattcttgaccaccaagaacagcccgctcggcatggttcttgacgccgttccggtgatc
ccgccggaattgcgtccaatggttcagctcgacggtggccgtttcgctacctccgacttg
aacgacctctaccgtcgtgtgatcaaccggaacaaccgcctcaagcgcttgcttgatctg
ggtgcgccggagatcatcgtcaacaacgaaaagcggatgctccaggaagccgttgactcc
ttgttcgacaacggtcgtcgtggccgtccggtcaccggaccgggtaaccgcccgttgaag
tctctgagcgacatgctcaagggcaagcagggtcgtttccgtcagaacctcctcggcaag
cgcgtcgattactctggccgttcggtcatcgttgttggcccacagttgaagctgcaccag
tgtggtctgcctaagcagatggctctggaactcttcaagccgttcgtgatgaagcgcttg
gttgatctcaaccacgcacagaacatcaagagcgctaagcggatggttgagcgttaccgc
ccgcaggtttgggacgttctcgaagagatcatcactgagcacccggttttgcttaaccgt
gcaccaaccctgcaccgtttgggcatccaggcgttcgagccgatgttggtcgaaggtaag
gcaatccagcttcacccgctggtttgtggcgccttcaacgctgacttcgacggcgatcag
atggctgtgcacttgcccttgagccctgaggctcaggcagaagctcgcgtgctgatgctc
tcctcgaacaacatcttgaagccttccgatggccgcccggtcaccctgccttcgcaggat
atgatcattggtctttaccacttgactaccaagcgggtcggttcagctggtgaaggacgg
attttcacctcgccttccgaagcgatcatggcgcacgacgccggtgttctgcacttgaac
tccaccgtcaagattcgtctggacaactttgtacccggtgaagactgggaggctcctgca
ggttgggaagccggccagcccgctatcgtggaaacttcgctcggtcaggtgctcttcaac
gacaccttgcctgcagattacccctgggttgagaaagttgccgataagggccagctttcc
gagatcgtcaacgatttggctgagcgctacccgaaggttgtcgtagcggcgacgcttgat
aacttgaaggacgctggcttctactgggcaactcgctccggtgtgaccgttgcgatctct
gacatcgaggtgcctgctgagaagccggccatccttgcaggttacgaggtcaaggctgcc
aaggttcagtcccagtttgaaaagggcttgattgctgacgacgagcgtcgccaggagctc
attgacatctggaaccaggcgaccaacgatgttgctgatgcgatgcgcaagagcttgtct
gcatccaacaccatcaaccggatggtttcctccggtgctcgtggtaactggatgcaggtt
cgccagattgccggtatccgtggcttggtggctaaccctaagggtgaaattatcccacgt
ccgatcaagtcttcgtaccgcgaaggactgtcggttttggaatacttcatcgctacgcac
ggtgcccgtaagggtctggccgataccgcgcttcgtaccgctaactcgggttacttgacc
cgtcgtctggtggacgtttcacaggatgtcatcgttcgcgaggacgactgtggcactgag
tacggcttgacgctgccgattgcggttgctgactcaaatggcgagctggtcatgcacgaa
gaggtcgagaactcggtctacgctcgtacattggccaccgaggtaaccgatgccaagggc
aaggtgcttgctgctgctggcgctgacgttggcgacgtactgatcgccgagctgttcgca
gctggcgtgaccgaggtcaaggttcgctccgtgctcacctgtgagtccgccgtcggaacc
tgtgctcagtgctatggccgttccttggctactggcaagctcgtggacattggtgaggcc
gttggcatcatcgctgcacagtccattggtgagcccggaacccagctgaccatgcgtact
ttccacactggtggtgctgtttctgctagccgtggtgaggacatcacccagggtctgccc
cgtatccaggagctcttcgaagctcgtaccccgaagggtgttgctcccattgcggaagca
gccggacgggtcaacatcgaagagaccgagcgccagatgcgtctggtgcttactccggac
gatggcaccgaggaaatcgcttacccgattctgcgtcgtgctcgtttgctggtcgctgat
ggtgaccgcgttgaggttggccagaagttggttgttggagctgtggatccaaagcaggtg
cttcgtgtgctcggcccgcgtgccgcgcagaagcacctcgtggaggaagtccagcgcgtt
taccgcagccagggtgtgggcatccacgataagcacgttgaggttattgttcggcagatg
ctccgtcgcgttacggtcatcgagtccggcgactcgaacttgctaccgggcgagcttgct
gagcgcggtcgcttcgagacggaaaaccgtcgcgtggtgtccgaggggcagaagcctgct
tcgggacgtaacgagctcatgggtatcaccaaggcttccttggctaccgagtcctggctc
tccgcggcatccttccaggagaccactcgcgtcttgacgcaagcggctatggaaggcaag
agcgatccgttgctcggcctgaaggagaacgtcatcatcggtaagttgatcccggctggt
accggtctgccgcgctacaccgacatcacggtggagccgacggaagaggcgaaggcgaac
ttgttcaccgcgccgagtgcgttcagcgattttgattacgcaggagttggtggcgacctc
gcccccgagttccaagcgatcccgctcgacgattacgatctgggttcggaataccgctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (24)   

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