KEGG   Renibacterium salmoninarum: RSal33209_2186
Entry
RSal33209_2186    CDS       T00641                                 
Name
(GenBank) DNA-directed RNA polymerase beta chain
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
rsa  Renibacterium salmoninarum
Pathway
rsa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RSal33209_2186
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsa03021]
    RSal33209_2186
   03400 DNA repair and recombination proteins [BR:rsa03400]
    RSal33209_2186
Enzymes [BR:rsa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RSal33209_2186
Transcription machinery [BR:rsa03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RSal33209_2186
DNA repair and recombination proteins [BR:rsa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RSal33209_2186
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: ABY23918
UniProt: A9WSY0
Position
complement(1930255..1933782)
AA seq 1175 aa
MEGSLLVASSASNNETANNVESTDGATRRISFAKIHEPLDVPNLLALQTESFDWLVGNGR
WQDRMQKAVDAGDESVATTSGLSDIFEEISPIEDFQGTMSLSFSEPEFADPKYTMAECKD
RDATFSAPLYVKAEFMNNNTGEIKQQTVFMGDFPLMTEKGTFVINGTERVVVSQLVRSPG
AYFERTADKTSDKDIFTAKIIPSRGAWFELEIDKRDQVGVRLDRKRKQSVTVLLKALGWT
ESQILEEFGEFDSIRATLEKDGTSTREDALLDIYRKLRPGEPPTVEAAQTLLDNLYFNPK
RYDLAKVGRYKINRKLGIDKSLASPDASVLDINDIVAIIKFLVTLHAGGKSLTAKRDGKD
FELRVDVDDIDHFGNRRIRAVGELIENQVRTGLSRMERVVRERMTTQDVEAITPQTLINI
RPVVAAIKEFFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGYEVRDVHPSHY
GRMCPIETPEGPNIGLIGSLASYGRINPLGFIETPYRKVSKGHVSDEVDYLTADDELNYI
IAQANAPLDSKSSFVEDQVLVRQRGGGGEPVLVAADDVEYMDVSPRQMVSVATALIPFLE
HDDANRALMGANMQRQAVPLVRSEAPVVGTGMERAAAVDAGDVVIAKKAGVVTEVSADLV
IMLNDDGTETNYRIAKYNRSNQGTAYNQRVLVSEGARLEVGGIIADGPATDQGELALGKN
LLVAFMSWEGHNFEDAIILSQRLVSEDVLSSIHIEEHEIDARDTKLGAEEITRDIPNVSE
EILAGLDERGIIHIGAEVDAGDILVGKVTPKGETELTPEERLLRAIFGDKSGEVRDTSLK
VPHGESGTVIGVRFFDRENDDDLAPGVNQLVRIYVAAKRKITNGDKLAGRHGNKGVISKI
LPIEDMPFLADGTPVDIVLNPLGVPGRMNVGQVLELHLGWIAKTGWKIDGEPDWVKNLPN
LPRETGRDQILATPVFDGAREEEISGLLDSTNVTRDGDLLINRSGKTRLFDGRSGEPFPD
PISVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGA
AYTLQELLTIKSDDIHGRVKVYEAIVKGENIPEPGIPESFKVLIKEMRSLCLNVEVLSTE
GSTIEMRDSDEEVFRAAEELGIDLSRAEPNSVEEV
NT seq 3528 nt   +upstreamnt  +downstreamnt
gtggaaggatccctcttggtcgcctcaagcgcctctaataacgaaaccgctaacaacgtc
gaaagcaccgatggtgcaacccgccgtatctcattcgcaaagattcacgaaccgcttgat
gttccgaatctgcttgcccttcagaccgagagctttgattggctcgtcggtaacgggcgc
tggcaggaccggatgcagaaggccgtcgacgccggagacgagagcgtagctactacctcc
ggtctgtcggacatcttcgaagagatctccccgatcgaggatttccagggcactatgtcc
ttgagcttctcggagccggagttcgctgatccgaagtacacgatggctgaatgcaaggac
cgggacgctacgttctcggctcctttgtatgtcaaagccgagttcatgaacaacaacact
ggtgaaatcaagcagcaaaccgtgttcatgggcgatttcccgctgatgaccgaaaaaggc
acctttgttatcaacggcaccgagcgtgttgtggtgtctcagttggttcgttcaccgggc
gcgtattttgagcgcactgctgacaagaccagtgacaaggacatctttacggcgaagatc
atcccctcgcgtggtgcttggtttgaactcgaaatcgacaagcgcgatcaggtcggcgtt
cgccttgaccgtaagcgtaagcagtcggtaacggttctactgaaggccctgggctggact
gagagccagatcctcgaagaattcggcgagttcgattcaatccgcgccaccttggagaag
gacggcacctcaacccgcgaagacgctttgcttgatatctaccgcaagctgcgcccgggc
gagccgccgacagttgaagcagcgcagacgttgcttgacaacctctacttcaacccgaag
cgttacgatctggccaaggttggtcgttacaagatcaaccgtaagctcggcatcgataag
tcattggcttcgccggatgcctcggtcttggacatcaacgacattgtcgcgattatcaag
ttcctggtcaccttgcacgctggcggtaagtcgctgacggccaagcgcgatggcaaagat
ttcgaactgcgcgttgacgttgatgatatcgaccacttcggtaaccgtcgtatccgcgcc
gttggtgagctcattgagaaccaggtccgcaccggcctttctcggatggagcgcgttgtc
cgcgagcggatgaccacccaggacgtcgaagcgattacgccgcagaccctgatcaacatc
cgtccggttgttgctgcgatcaaggagttcttcggaacgtcgcagctctcacagttcatg
gaccagaacaacccgctggccggtttgacgcacaagcgtcgtctctccgcgctaggcccg
ggtggtctgtcccgtgaccgtgcaggctacgaagttcgtgacgtgcacccctcgcactac
ggccgtatgtgccccatcgaaactcctgaaggcccgaacattggtctgattggttcattg
gcttcctacggacgcatcaacccgctcggcttcatcgagaccccgtaccgcaaggtttcc
aagggtcacgtttctgacgaagttgattacctcaccgcagatgacgagctcaactacatc
atcgcgcaggcaaacgctcccttggatagcaagtccagcttcgttgaagaccaggttttg
gttcgtcaacgtggtggtggcggcgagcctgttttggttgctgctgacgacgtcgagtac
atggacgtctccccgcgccagatggtgtcggtcgctactgcgctgatcccgttcttggag
catgacgatgctaaccgtgcactcatgggtgccaacatgcagcgtcaggctgtgccgttg
gttcgttccgaggctcctgttgtgggcaccggtatggagcgcgccgccgctgttgacgcg
ggcgacgtcgtcattgctaagaaggccggtgtagtcaccgaagtttcggcagacctggtc
atcatgctcaacgacgatggcaccgagaccaactaccggattgccaagtacaaccgctcc
aaccaaggcaccgcttacaaccagcgcgtgttggtttctgaaggcgctcgtcttgaagtt
ggcggcatcatcgctgacggtccggcaacggatcagggcgaattggcgctgggtaagaac
ttgttggttgcgttcatgtcttgggaaggccacaacttcgaggatgcgatcatcttgtcg
cagcgcctcgtctccgaagatgtgctgtcctctattcacattgaagagcatgaaatcgat
gctcgcgacaccaagcttggtgctgaagagatcacgcgggacatcccgaacgtctctgag
gagatccttgctggactcgacgagcgcggcatcatccacatcggtgctgaagttgatgct
ggcgatatcttggttggtaaagtcaccccgaagggcgagaccgagctaactcctgaggag
cgcttgctccgtgcgatcttcggtgataagtcgggcgaagtacgtgacacctcactcaag
gttccgcacggtgagtccggtaccgtcattggcgttcgcttttttgatcgcgaaaacgac
gacgatctggcccctggcgtgaaccaattggttcgcatctatgttgctgccaagcgcaag
atcaccaacggcgataagctcgctggccgccacggtaacaagggtgtcatctccaagatc
ttgccgatcgaagatatgccgttccttgccgatggcactccggtggacatcgtgctgaac
cccttgggtgttccgggtcgtatgaacgtcggccaggtgctggaattgcacctcggttgg
atcgcgaagactggttggaagatcgacggcgagccagactgggttaagaacctgccgaac
ttgccgcgtgaaactggacgtgaccagatcttggccaccccggtgttcgacggcgcacgt
gaggaagagatctcgggcctgctcgattcgaccaacgtgactcgtgacggagatcttctg
atcaaccgttccggtaagacgcgtttgttcgacggccgctccggcgagccgttcccggac
ccgatctcggtgggctacatgtatatcttgaagcttcaccacttggtggacgacaagatt
cacgcccgttccacgggcccgtattccatgatcactcagcagcccttgggcggtaaagcg
cagttcggtggacagcgctttggcgaaatggaagtttgggcgctggaagcttatggcgcc
gcgtacaccctgcaggaactgctgaccatcaagtcggatgacattcacggtcgtgtgaag
gtctacgaagcgatcgtcaagggtgagaacattccggagccgggtatccccgaatccttc
aaggttctaatcaaggaaatgcggtcgttgtgcttgaacgtggaggttctctccactgaa
ggcagcacaatcgaaatgcgtgactcggatgaagaagtcttccgggccgcggaggaactc
ggcatcgacctctcaagggccgagccgaactccgtcgaagaagtgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

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