KEGG   Cereibacter sphaeroides KD131: RSKD131_0006
Entry
RSKD131_0006      CDS       T00844                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
rsk  Cereibacter sphaeroides KD131
Pathway
rsk03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rsk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RSKD131_0006
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsk03021]
    RSKD131_0006
   03400 DNA repair and recombination proteins [BR:rsk03400]
    RSKD131_0006
Enzymes [BR:rsk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RSKD131_0006
Transcription machinery [BR:rsk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RSKD131_0006
DNA repair and recombination proteins [BR:rsk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RSKD131_0006
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: ACL99865
UniProt: B9KL83
Position
1:3303..7436
AA seq 1377 aa
MAQSYVGQKRIRRYYGKIREVLEMPNLIEVQKSSYDLFLKSGDGPKAADGEGIQGVFQSV
FPIKDFNETAVLEFVKYELEKPKYDVDECQQRDMTYAAPLKVTLRLIVFDVDETTGARSV
KDIKEQDVYMGDMPLMTANGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGMDQEGIMDAYYETVNFKHQK
NRGWVTRFFPERVRGTRPTYDLVDAATGEVILKAGEKATPRMVKKWIDEAQITELLVPFD
HIVGRYVAQDIINEETGEIWVEAGDELTMEYDRDGEVKGGTLKLLLDQGITDIPVLDIDN
VNVGPYIRNTMAADKNMGRDTALMDIYRVMRPGEPPTVEAASNLFDTLFFDSERYDLSAV
GRVKMNMRLDLGKPDTQRTLDRDDIIACIKALTELRDGKGEIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTIMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGQNIGLINSLATFAR
VNKYGFIETPYRKVVEGAVTDDVVYMSATEEMRHTVAQANAQLDEEGRFVSDLISSRKAG
EFMLNPPDAIDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQSDAPFV
GTGIEAVVARDSGAAIMARRAGVIDQVDATRIVVRATEMLEPGEPGVDIYRLRKFKRSNQ
SSCINQRPLVKVGDVVHRGEVVADGPCTDMGELALGRNVIVAFMPWNGYNYEDSILISER
ILRDDVYTSIHIEEYEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVQPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGAYGTIVEVRVFNRHGVDK
DERALQIEREEVERLARDRDDELAILERNIYSRLRTLIMGKTAVKGPKGIRAGSEINEDL
LSTLSRGQWWQLALGEEADAKEVEALHEQFEAQKRALDHRFEDKVEKVRRGDDLPPGVMK
MVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPIEDMPFLADGTHVDLVLNPLGVPSRMN
VGQILETHMGWAARGLGIKIDEALQDYRRSGDLTPVKEAMRLAYGDETYEGAFGDREDED
LVEMAGRVTKGVPIATPVFDGAKEPDVNDALRRAGFDQSGQSIVFDGRTGEQFARPVTVG
VKYMLKLHHLVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKMYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDADEE
NT seq 4134 nt   +upstreamnt  +downstreamnt
atggctcagagctacgttggccagaaacgtatccgcaggtactacggcaagatccgcgaa
gtgctggagatgccgaacctgatcgaggttcagaaatcctcctacgatctgttcctgaag
tcgggcgacggcccgaaggcggccgatggcgaaggcatccagggcgtcttccagtcggtc
ttcccgatcaaggacttcaacgagaccgccgtgctcgagttcgtgaaatacgagctcgaa
aagccgaaatatgacgtggacgagtgccagcagcgcgacatgacctatgccgcgccgctg
aaggtgacgctgcgcctgatcgtgttcgatgtcgacgagaccacgggcgcccgctcggtc
aaggacatcaaggaacaggatgtctacatgggcgacatgcccctgatgaccgccaacggc
acgttcatcgtgaacggcaccgagcgcgtgatcgtcagccagatgcaccgcagccccggc
gtgttcttcgaccacgacaagggcaagacccactcctcgggcaagctcctgttcgcctgc
cgcatcatcccctaccgcggctcgtggctggacttcgaattcgacgcgaaggacatcgtc
ttcgcgcgcatcgaccgtcgccggaagctgccggtgacgacgctgctctatgccctcggc
atggatcaggaaggcatcatggatgcctattacgaaaccgtgaacttcaagcatcagaag
aaccgcggctgggtcacccggttcttccccgagcgcgtgcgcggcacccgtcccacctac
gatctcgtggatgcggccaccggcgaggtcatcctgaaggcgggcgagaaggccacgccg
cggatggtcaagaagtggatcgacgaggctcagatcaccgagcttctggtgccgttcgac
catatcgtcggccgctatgtcgcgcaggacatcatcaacgaggaaaccggcgagatctgg
gtcgaagccggtgacgaactcacgatggagtacgaccgcgacggcgaggtgaagggcggc
acgctgaagctgctgctcgatcagggcatcaccgacatcccggtgctcgacatcgacaat
gtcaacgtcggcccctacatccgcaacacgatggcggcggacaagaacatgggccgcgac
accgcgctcatggacatctaccgcgtcatgcgtccgggtgagccgccgaccgtcgaggcg
gcgtcgaacctgttcgacacgctgttcttcgacagcgagcgctatgacctgtcggccgtc
ggccgcgtgaagatgaacatgcgtctcgacctcggcaagcccgacacccagcgcacgctc
gaccgcgacgacatcatcgcctgcatcaaggcgctgaccgagctgcgcgacggcaagggc
gagatcgacgacatcgaccacctcggcaaccgccgggtgcgctcggtgggcgagctcatg
gagaaccagtaccgcgtcggtctcctgcgcatggagcgcgcgatcaaggagcgcatgtcc
tcggtcgagatcgacacgatcatgccgcaggatctcatcaacgcgaagcctgcggcggcc
gcggtgcgcgagttcttcggctcgtcgcagctctcgcagttcatggaccagaccaacccg
ctgtcggaagtcacccacaagcggcgtctctcggccctcgggccgggcggtctgacccgc
gagcgcgcgggcttcgaggtgcgcgacgttcacccgacccactacggccggatgtgcccc
atcgagacgccggaaggccagaacatcggcctcatcaactcgctcgcaaccttcgcccgc
gtgaacaagtacggcttcatcgagaccccctaccggaaggtcgtggagggtgccgtgacc
gacgacgtggtctacatgtcggccaccgaggagatgcggcacacggtggcgcaggccaac
gcgcagctcgatgaggagggccggttcgtctcggacctgatctcgtcgcgcaaggcgggc
gagttcatgctgaacccgccggatgccatcgacctcatcgacgtgtcgccgaagcagctc
gtgtcggtcgcggcctcgctgatcccgttcctcgagaacgacgacgcgaaccgcgcgctg
atgggctcgaacatgcagcgtcaggcggtgccgctcctgcaatccgacgcgcccttcgtg
ggcacggggatcgaggccgtggtggcgcgtgactccggggccgccatcatggcgcgccgc
gccggcgtgatcgaccaggtggacgcgacgcgtatcgtcgtgcgcgccaccgagatgctg
gagccgggcgagccgggtgtcgacatctaccgtctgcgcaagttcaagcgctcgaaccag
tcgtcctgcatcaaccagcgcccgctggtgaaggtgggtgacgtggtgcaccgtggcgag
gtggtggccgacggcccctgcaccgacatgggcgagctggccctcggccggaacgtgatc
gtggccttcatgccgtggaacggatacaactacgaggactcgatcctgatctccgagcgg
atcctccgcgacgacgtctatacctcgatccatatcgaggaatacgaggtcgcggcgcgg
gatacgaagcttggtccggaagagatcacccgcgacatcccgaacgtcggcgaggaagcc
ctgcgcaacctcgacgaggccggtatcgtctatatcggcgccgaagtgcagccgggcgac
atcctcgtgggcaagatcacccccaagggcgaaagcccgatgacgccggaggaaaagctc
ctccgcgccatcttcggcgaaaaggcctcggacgtgcgcgacacgtcgctgcgcctgccg
ccgggggcttacggcacgatcgtggaagtgcgggtcttcaaccgccacggcgtcgacaag
gacgagcgggcgctgcagatcgagcgcgaggaagtcgagcgtctggcccgtgaccgggac
gacgagctcgcgatcctcgagcgcaacatctactcgcgtctgcgcacgctgatcatgggc
aagaccgcggtgaaggggccgaagggcatccgggcgggctcggagatcaacgaggacctg
ctgtccacgctgtcgcgtggccagtggtggcagctggcgctgggtgaggaagccgacgcg
aaggaagtcgaggccctccacgagcagttcgaggcgcagaagcgcgcgctcgatcaccgc
ttcgaggacaaggtcgagaaggtccgtcgcggcgacgacctgcctccgggcgtgatgaag
atggtcaaggtcttcgtggcggtgaagcgcaagctgcagccgggcgacaagatggccggc
cgtcacggcaacaagggcgtcatctccaaggtcgtgccgatcgaggacatgccgttcctt
gcggacggcacgcatgtcgacctcgtgctcaacccgctcggcgtgccgtcgcggatgaac
gtggggcagatcctcgagacccacatgggctgggccgcacgcggtctgggcatcaagatc
gacgaggcgctgcaggactaccgccgctcgggcgacctcacgccggtgaaggaggccatg
cgtctcgcctatggcgacgagacctatgaaggggccttcggcgaccgcgaggacgaggat
ctggtcgaaatggccggccgcgtcacaaagggcgtgccgattgcgacgccggtcttcgac
ggggcgaaggagcccgacgtcaacgacgcgctgcgccgggccggcttcgaccagagcggg
cagtccatcgtcttcgacggccgcacgggcgagcagttcgcgcgtcccgtcaccgtgggc
gtgaagtacatgctgaagctgcaccacttggtggacgacaagctgcacgcgcggtcgacc
ggtccgtactcgctcgtcacccagcaaccgctgggcggcaaggcgcagttcggtggccag
cgtctgggcgagatggaggtctgggctctggaagcctacggcgccgcctacaccctgcag
gagatgctgacggtgaagtcggacgacgtggcgggccgcacgaagatgtacgagtccatc
gtcaagggcgaagacaacttcgaggccggcgtcccggagtcgttcaacgtgctcgtcaag
gaagtgcggggcctcggcctcaacatggaactcctggatgcggacgaggaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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