KEGG   Ralstonia solanacearum PSI07: RPSI07_2354
Entry
RPSI07_2354       CDS       T01273                                 
Symbol
rne
Name
(GenBank) Ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
rsl  Ralstonia solanacearum PSI07
Pathway
rsl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rsl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RPSI07_2354 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsl03019]
    RPSI07_2354 (rne)
   03009 Ribosome biogenesis [BR:rsl03009]
    RPSI07_2354 (rne)
Enzymes [BR:rsl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     RPSI07_2354 (rne)
Messenger RNA biogenesis [BR:rsl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     RPSI07_2354 (rne)
Ribosome biogenesis [BR:rsl03009]
 Prokaryotic type
  rRNA processing factors
   RPSI07_2354 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: CBJ51719
Position
2469315..2472362
AA seq 1015 aa
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLQVPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWKAVDGAAVENRAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQAR
AFMSVVMPDNMNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAV
DVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETR
LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPH
YKLERLRHDDPRLDDSKASYKMAEEAAKELEADTAYSTRKEAAKPRQEAAVKGITPEQPA
PVSVPRPERTARAEAAPAAPQAQAPAPVPAQSGFMSWLKSLFGGKPAEPVVAAPVETPKR
AEDGSRRDRGSRQDRGSRSSQRGERGERGERQGQQGGRDGQRQGQGREGRNEAREGQAQR
EGQRESQRGSRDRNRQPTETADRETVEARQPQQGQEAREGQGRRERNQERRERAPREGRE
GRESREGREGREPREGRDHREGRERDTQQAKEGASAAAPDTVEGLIDPTAAAQVPQALLD
TTVPAEAITAEGAAPGAESGSEGEERRRRGRRGRNRYRRDREGAEDVRAEGETESEGETA
AAEPATEAQPVVETVQPASPILHETVTEPVQTLAPAAIETAAPVEQEPVHAAETVAPAPA
QPAAQPAEPVTAAVATPVAETAAATIVTALAEVPAPVSTVAQASPLPIGTLQAVVADAGM
TWVHTDAQKLQAAQEEAARTVTPPRAPRERKPLPPVQQGPMILVETSRPAGGTDQ
NT seq 3048 nt   +upstreamnt  +downstreamnt
atgaaacgcatgttgttcaatgcgacgcagcaagaagaattgcgcgtcgccattgtcgat
ggccagaaactgatcgacatcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaac
atctacaagggtgtcatcacccgcatcgaaccgtcgctggaagcctgcttcgtcaactac
ggcgaagagcggcacggtttcctccccttcaaggaagtcgcccgcgcctacttcaaggac
ggcgtggatgtgcgcaccgcccgcatccaggacgcgctgaccgaaggccaggaactgatc
gtccaggtggagaaggaggagcgcggcaacaagggcgcggcgctgaccaccttcatctcg
ctggccggccgctacctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgaagaccgccaggaactgcgcgaaaccatggcgcaactgcaggtcccg
gaaggcatgagcatcattgcccgcaccgccggcatcggccgctcggccgaagagctgcag
tgggacctgaactacctgatgcagctgtggaaggcggtcgacggtgccgcggtcgagaac
agggcgccgctgctgatctatctcgaatccagcctggtgatccgcgccatccgcgattac
ttccagccggacatcggtgagatcctgatcgataccgacgatatctacgatcaggcccgc
gccttcatgagcgtggtgatgcccgacaacatgaatcgggtgaagaagtaccgcgacgac
gttcccctgttctcgcgcttccagatcgaacaccagatcgaatcggcctattcgcgcatg
gtgatgctgccctccggcggcgccatcgtgatcgaccataccgaggcgctggtcgccgtc
gacgtgaactcggcgcgtgccaccaagggcgcggacatcgaagagaccgcgctgcgcacc
aacctcgaagcagccgacgagattgcccgccagttgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggagtcgagcaaggcccagaaggacgtcgagacccgc
ctgaaggacgcactgcgccacgaccgcgcccgcgtgcagatgggcaagatcagccgcttc
ggcctgatggagctgtcgcgccagcgactgcgtccgtcgctgtccgagggctcgcacgtc
acctgcccgcgctgcaacggcacaggccatatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacacggccgcgatccactgccag
gtgccggtggaagtggctgcgttcctgctcaacgagaagcgcccggacatcaacctgatc
gagacgcgcttcaaggtcaatgtgctgctgatcccgaacaagcatctggaaacgccgcac
tacaagctcgagcgcctgcgtcacgacgatcctcgcctggatgacagcaaggccagctac
aagatggccgaggaagccgccaaggaactggaagccgacaccgcttacagcacccgcaag
gaagcggccaagccgcgccaggaagcggcggtcaagggcatcacgccggaacagccggcc
ccggtatcggtgccgcgtcccgagcggacggcccgtgccgaggcggccccggccgccccg
caggcgcaggcgccggccccggtgcctgcacagagcgggttcatgtcgtggctgaagtcg
ctgtttggcggcaagccggccgagccggtggtcgccgcgcccgtcgagacgcccaagcgc
gctgaagatggcagccgtcgcgaccgtggcagccgccaagaccgcggcagccgcagcagc
cagcgcggggaacgcggtgagcgtggcgaacgccagggccaacaaggcggccgcgacggc
cagcgccaggggcaaggccgcgaaggccgcaacgaagcccgcgagggccaggctcagcgt
gaaggtcaacgtgaaagccagcgcggcagccgcgaccgcaatcgccagccgaccgagacc
gccgaccgcgaaacggtcgaggcacgccaacctcagcagggccaggaagcacgcgaaggc
cagggccgccgcgaacgcaaccaggaacgccgcgagcgcgcaccgcgcgaaggtcgcgag
ggtcgggaaagccgtgaaggacgtgagggccgcgaaccgcgcgaaggccgcgaccatcgt
gaaggccgtgagcgcgacacgcagcaggccaaggaaggcgccagcgccgcagccccggac
acggtggaaggcctgatcgatccgaccgcagccgcccaggtgccgcaagcgctgttggac
accaccgtaccagccgaggcaatcactgccgagggtgcagcgccgggcgcggaaagcggc
agcgagggcgaagagcgccgccgccgcggtcgccgtggccgcaatcgctatcgccgtgac
cgcgagggcgcggaagacgtgcgcgcggaaggcgaaaccgagagcgaaggcgaaaccgct
gccgctgagccggcaacggaggcacagcctgtcgtggaaaccgtccagccggcaagcccg
atcctgcacgaaaccgtgacagagccggtgcagacgctggccccggcagcgatcgaaacc
gctgcgccggtcgagcaggagccggtgcatgcggccgagactgtggcacccgctccggca
cagcctgcggcgcaaccggccgagccggtcaccgcagcggtcgcaacgcccgtggcggaa
acggccgcggccaccatcgtgacggccctcgccgaagtgccggcaccggtcagcacggtg
gcccaggcttcgccgctgccgatcgggacgctgcaggccgtggtggccgacgccggcatg
acgtgggtccacaccgacgcgcagaagctgcaggcggcgcaggaagaagcggcccgcacc
gtcacgccgccgcgcgcgccccgcgaacgcaaaccgctgccgccggtccagcagggaccg
atgatcctggtcgaaaccagccgtccggcgggcggcaccgaccagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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