KEGG   Ralstonia solanacearum Po82: RSPO_c00462
Entry
RSPO_c00462       CDS       T02005                                 
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rsn  Ralstonia solanacearum Po82
Pathway
rsn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rsn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RSPO_c00462 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsn03021]
    RSPO_c00462 (rpoC)
   03400 DNA repair and recombination proteins [BR:rsn03400]
    RSPO_c00462 (rpoC)
Enzymes [BR:rsn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RSPO_c00462 (rpoC)
Transcription machinery [BR:rsn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RSPO_c00462 (rpoC)
DNA repair and recombination proteins [BR:rsn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RSPO_c00462 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Apocytochr_F_C DUF6744
Other DBs
NCBI-ProteinID: AEG67765
UniProt: F6FXN2
Position
488419..492648
AA seq 1409 aa
MKALLDLFRQVQQEEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELAAPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVVEPGMTPLKKSQIMSEDDYLAKCDEYGEGEFVAL
MGAEGIRELLRGIDIEKQIETIRAELQATGSEAKIKKFAKRLKVLEAFQRSGIKPDWMIM
EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML
QEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP
TLKLHQCGLPKLMALELFKPFIFHKLETMGIATTIKAAKKEVESQTPVVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLFPANGDPSIVPSQDVVLGLYYTTRDKINGRGEGMTFADISEVIRAYEN
KEVELASRVNVRITEYDLVNPEADGDARFAPKITLQATTVGRAILSEILPKGLPFSVLNK
PLKKKEISRLINTAFRKCGLRETVIFADKLLQSGFRLATRAGISIAIDDMLVPPAKEKII
SEAAAKVKEYDKQYMSGLVTDQERYNNVVDIWGAAGDQVGKAMMEQLQTEDVVDRNGNTV
KQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI
STHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVLMKALVEGGEVIEA
LRDRILGRVVVNDVVNPETQETAIEAGTLLDEDLVELIDSIGVDEVKVRTPLTCDTRYGL
CAKCYGRDLGRGVLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKA
TGTVRFTATMRYVTNAKGEQIVISRSGEALITDDHGRERERHKIPYGATLLVRDGQAIKA
GTQLATWDPLTRPIISEYSGTIKFENVEEGVTVAKQMDEVTGLSTLVVIDAKRRTASTKG
IRPQVKLLDSSGAEVKIPGTDHSVTIGFQVGALITVKDGQQAQVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLDGIAHEFLIAKEK
QVLVHDGQVVNKGEMIVEGPADPHDILRLKGVEELATYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIADVGDTKFIPGEQVERSELLDENDRVIAEGKRPATYENLLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKVDDLRGLKENVIVGRLIPAGTGLAYHRARKAKET
ADRDRAAAIAEEEAASIFETPAVQQEGDA
NT seq 4230 nt   +upstreamnt  +downstreamnt
atgaaagcattgctcgacctcttccgccaggtacagcaagaagagcagttcgacgcgatc
aagatcggtctcgcgtcgcccgagaaaatccgttcgtggtcgtacggcgaggtcaagaag
cccgagaccatcaactaccgcacgttcaagccggagcgtgacggcctgttttgcgccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaaacac
cgtggcgtgatctgcgagaagtgcggcgtggaagtgacgctggccaaggtgcgccgcgag
cgcatgggccacatcgagctcgctgcgccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctaggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcattcgtggtggtcgaaccgggcatgacgccgctcaagaagagccagatcatg
tcggaagacgattacctggccaagtgcgacgaatacggcgagggtgaattcgtcgcgctg
atgggcgccgaaggcattcgtgagctgctgcgcggcatcgacatcgagaagcagatcgag
acgatccgtgccgagctgcaggccaccggttcggaagccaagatcaagaagttcgccaag
cgcctgaaggtgctcgaggcgttccagcgctcgggcatcaagcccgactggatgatcatg
gaagtgctgccggtgctgccgccggagctgcgtccgctggtgccgctggatggcggccgc
ttcgccacgtcggacctgaacgacctgtatcgccgcgtgatcaaccggaacaaccgcctg
aagcgtctgctcgagctgaaggcgccggagatcatcgtgcgcaacgaaaagcgcatgctg
caggaagcggtggactcgttgctggacaacggccgtcgcggcaaggcgatgaccggcgcc
aacaagcgtccgctgaagtccctggccgaaatgatcaagggcaagggcggccgtttccgt
cagaacctgctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtgggcccg
acgctcaagctgcaccagtgcggtctgccgaagctgatggcgctcgagctgttcaagccg
ttcatcttccacaagctggagacgatgggcatcgccaccaccatcaaggcggcgaagaag
gaagtcgaaagccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgagcac
ccggtgatgctgaaccgtgcgccgacgctgcaccgcctgggcatccaggcgttcgagccg
gtgctgatcgaaggcaaggccatccagctgcacccgctggtctgcgcggcgttcaacgcc
gacttcgacggtgaccagatggctgtccacgttccgctgtcgctcgaagcgcagatggaa
gcacgcaccctgatgctggcgtcgaacaacgtgctgttcccggccaacggcgatccgtcg
atcgtgccgtcgcaggacgtggtgctgggtctgtattacacgacccgcgacaagatcaac
ggccgcggcgagggcatgaccttcgccgacatctcggaagtgatccgcgcctacgagaac
aaggaagtcgaactggcttcccgcgtgaacgtgcggatcaccgagtacgacctggtcaac
ccggaagccgacggcgacgcccgcttcgcgccgaagatcacgctgcaggccaccacggtc
ggccgcgcgatcctgtcggagatcctgccgaagggtctgccgttctcggtgctgaacaag
ccgctgaagaagaaggaaatctcgcgcctgatcaacacggcgttccgcaagtgcggtctg
cgcgagacggtgatcttcgccgacaagctgctgcagtcgggcttccgcctggccacgcgc
gccggtatctcgatcgccatcgacgacatgctggtgccgccggccaaggagaagatcatc
tccgaggccgccgccaaggtgaaggaatacgacaagcagtacatgtcgggtctggtgacc
gaccaggagcgttacaacaacgtcgtggacatctggggcgccgccggcgaccaggtgggc
aaggcgatgatggagcagctccagaccgaagacgtggtcgaccgcaacggcaacaccgtc
aagcaagagtcgttcaactccatctacatgatggccgactcgggcgcacggggttccgcg
gcgcagatccgtcagctggcagggatgcgtggcctgatggccaagccggacggctccatt
atcgaaacgccgattaccgcgaacttccgcgaaggcctgaacgttctgcagtacttcatc
tcgacccacggtgcgcgtaagggtctggccgatacggcactgaagaccgcgaactcgggt
tacctgacccgtcgtctggtcgacgtgacgcaggatctggtggtggtggaagacgattgc
ggtacctccaacggcgtgctgatgaaggcactggtcgagggcggtgaagtgatcgaagcc
ctgcgcgaccgtatcctgggccgcgtggtcgtcaacgacgtggtgaatccggaaacgcag
gaaaccgcgatcgaagccggcacgctgctggacgaagacctggtcgagctgatcgattcg
atcggcgtggacgaggtcaaggtccgcacgccgctgacctgcgacacgcgctacggcctg
tgcgccaagtgctacggccgcgacctcggccgcggcgtgctggtgaactcgggcgaagcg
gtgggcgtgattgccgcccagtcgatcggtgagccgggcacgcagctgaccatgcgtacg
ttccacatcggtggcgcggcatcgcgtgcggcagtcgcgtcgagcgtggaagccaaggcg
accggtaccgtgcgcttcacggcgaccatgcgctatgtcaccaacgcgaagggcgagcag
atcgtcatctcgcgttcgggcgaggcgctgatcaccgacgatcacggccgtgagcgcgag
cgccacaagatcccgtacggcgcgacgctgctggtgcgcgatggccaggccatcaaggcc
ggcacgcagctcgccacgtgggatccgctgacgcgtccgatcatttcggaatactcgggc
accatcaagttcgagaacgtcgaagaaggcgtgaccgtcgccaagcagatggacgaagtg
accggtctgtcgacgctggtggtgatcgatgccaagcgtcgcacggcgtcgacgaagggc
atccgtccgcaggtgaagctgctcgactcgtcgggcgccgaagtgaagatcccgggcacg
gaccactccgtgaccatcggcttccaggtgggcgcgctgatcaccgtgaaggacggtcag
caagcgcaggtcggtgaagtgctcgcacgtatcccgaccgaatcgcagaagacgcgtgac
attacgggtggtctgccgcgcgtggccgagctgttcgaagcgcgttcgccgaaggacgcc
ggcattctggcggaagtcaccggcacgacctcgtttggtaaggacaccaagggcaagcag
cgcctggtgattacggacctcgatggcatcgcccatgagttcctgatcgccaaggaaaag
caggtgctggtgcacgacggccaggtggtcaacaagggcgagatgatcgtcgaaggcccg
gccgacccgcacgacatcctgcgcctgaagggcgtggaagagctggcgacctacatcgtc
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaa
gtgattgttcgtcagatgctgcgtcgcgtgcagatcgccgatgtgggcgacaccaagttc
atcccgggtgaacaggtggagcgctcggagctgctcgacgagaacgaccgcgtgatcgcc
gaaggcaagcgtccggccacctacgagaacctgctgctgggtatcacgaaggcgtcgctg
tcgaccgacagcttcatctcggcggcgtcgttccaggaaaccacgcgcgtcctcaccgaa
gccgccatcatgggcaaggtggacgacctgcgcggtctgaaggaaaacgtcatcgtcggc
cgcctgatcccggccggtaccggtctggcttaccaccgcgcccgcaaggcgaaggaaacc
gccgaccgcgaccgcgccgcggcgattgcggaagaagaagccgcctcgatcttcgagacg
cccgccgtccagcaggaaggcgacgcgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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