KEGG   Rummeliibacillus stabekisii: ATY39_11940
Entry
ATY39_11940       CDS       T04369                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rst  Rummeliibacillus stabekisii
Pathway
rst03030  DNA replication
rst03410  Base excision repair
rst03420  Nucleotide excision repair
rst03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rst00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ATY39_11940 (ligA)
   03410 Base excision repair
    ATY39_11940 (ligA)
   03420 Nucleotide excision repair
    ATY39_11940 (ligA)
   03430 Mismatch repair
    ATY39_11940 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rst03032]
    ATY39_11940 (ligA)
   03400 DNA repair and recombination proteins [BR:rst03400]
    ATY39_11940 (ligA)
Enzymes [BR:rst01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     ATY39_11940 (ligA)
DNA replication proteins [BR:rst03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     ATY39_11940 (ligA)
DNA repair and recombination proteins [BR:rst03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     ATY39_11940 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ATY39_11940 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     ATY39_11940 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      ATY39_11940 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT RNA_pol_A_CTD AphA_like BRCT_2 zf-NADH-PPase
Other DBs
NCBI-ProteinID: AMX00071
UniProt: A0A143HF00
Position
complement(2394892..2396898)
AA seq 668 aa
MDRVQLENRVAELNKLLHEYGHAYYVLDQPIVPDAIYDQLLHELIAIEEENPDLIFPDSP
TRRVGGEILTGFNKVTHQYPMLSLGNAFNEEDLNDFDRRVRQVVGDQVTYVCELKIDGLA
ISLRYEDGLFVQGATRGNGTVGEDITENLKTVHSIPLRLKEPVSIEARGECYMPKRSFTN
LNKMRAEKGDELFANPRNAAAGSLRQLDPKVAASRNLSTFIYAMGGNGEAYGLESHSEAL
DYMDHLGFQTNHERRKFTNMREVMAYIEEWTEQRPTLPYEIDGIVIKVDSYNQQEELGNT
VKVPRWSIAYKFPAEEVVTTVLDIDLTVGRTGVVTPTAILQPVQVAGTTVGRATLHNEDI
IREKDVRIGDQVIIRKAGDIIPEVVSVLFDQRKEDSEPFVMPTHCPVCDSELVRIEGEVA
LRCVNPQCFAQISEGMAHFVSRNAMNIDGLGEKVVEQLLRSGLVKDVSDLYRLTVDELVQ
LERMGEKSATNLVNAIAASKGNSLERLLFGLGIRHVGAKAARLLAEEFETMDRLIGATET
ELVNVFEIGDKMADSVLTYFDNEDVLALISRLKEAGVNMNYLGKKVNAAEIDSPFSGKTI
VLTGKLEQLTRDDAKVKIEELGGKVTGSVSKKTDLVIAGTEAGSKLAKAEDLGIEVWDED
RLLEELRE
NT seq 2007 nt   +upstreamnt  +downstreamnt
atggaccgagttcaattggaaaacagagtggcggagttaaacaaacttcttcatgaatac
gggcacgcttactatgtattggatcagcccatcgtacctgatgctatctacgatcaattg
ctacatgaattgattgctatcgaagaagaaaatcctgaccttatttttccggattcacca
acaagacgagtgggcggagaaatactgacagggtttaacaaagtgacgcatcaatatccg
atgttgagtttaggaaatgcgtttaatgaagaagatctaaacgattttgaccgccgtgta
cgccaggtggttggagatcaggtcacatatgtatgtgagctgaaaattgacggtctagcg
atttcactccgttatgaagacgggctttttgtacaaggtgccacgcgcgggaatgggaca
gttggcgaggacatcacagaaaacctgaaaactgttcattccattccgctgcgtttaaaa
gaacctgtcagtattgaagcacgcggcgaatgctatatgccaaagcgttcatttactaat
ttgaataagatgagggcagaaaaaggcgatgagctctttgctaatccgcgaaatgctgca
gctggttcgcttcgtcagcttgatccaaaggtagcagccagcagaaatttatcgacattc
atttatgcgatgggtggtaacggcgaagcatatggccttgaaagccatagtgaagcactt
gattatatggaccatttgggctttcaaacaaaccatgagagaagaaagttcactaatatg
agagaagtaatggcgtatatcgaggaatggacagagcaacgcccaacactgccgtatgag
attgatggcattgtcatcaaagtagacagctacaaccagcaagaagaactagggaatacc
gtcaaagttcctcgttggtctatcgcgtataaattcccagctgaggaagttgtaacaact
gttttagacattgacttaactgtgggccggacaggggttgtgacaccgactgccatcttg
cagcctgtccaagtagcagggacaactgttggacgtgcaacgcttcataatgaagatatc
attcgtgaaaaagatgtgcgcatcggcgatcaggtcatcatccgaaaagcgggtgatatt
attcctgaagtggtatctgtactgtttgatcaacgaaaagaggatagcgaacctttcgtt
atgccgacacattgtccggtatgcgacagtgaacttgttcgcattgaaggggaagtagcc
ttgcgctgcgtcaacccgcaatgctttgcccaaatatcagaaggaatggcacacttcgtc
tcacgcaatgccatgaatatcgatggattgggtgaaaaggttgtagaacaattgttaagg
tctgggctggttaaagatgtatctgatttgtaccgccttactgttgatgaattggtacag
ctcgagcgcatgggtgagaaatctgcaaccaatttagtgaacgcgattgcagcctctaag
gggaattcattagagcgcttattgttcggcttaggcatccgacatgtcggcgccaaagca
gcaaggctactggctgaagaatttgaaacgatggatcgcttaatcggtgcgacagaaaca
gaattagtgaacgtctttgaaattggcgataaaatggcggattcagtcttgacgtatttc
gataatgaagacgtgttggccttgatctcacgtttaaaagaagctggcgtcaacatgaat
taccttggcaagaaggtgaacgcagcggaaatcgacagtccattttcaggaaaaacaatt
gtcctgaccggtaaattagaacaattgacaagagacgatgcaaaagtgaaaatagaagag
ttaggaggcaaagtcacaggcagcgtcagcaaaaagacggacctggtcattgccggaaca
gaggcaggctctaaactcgcaaaagccgaagatttgggcattgaagtgtgggatgaggac
cgcctgcttgaagaattaagagagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (48)   

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