KEGG   Rickettsia slovaca 13-B: Rsl_217
Entry
Rsl_217           CDS       T01671                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta prime chain
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rsv  Rickettsia slovaca 13-B
Pathway
rsv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Rsl_217 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsv03021]
    Rsl_217 (rpoC)
   03400 DNA repair and recombination proteins [BR:rsv03400]
    Rsl_217 (rpoC)
Enzymes [BR:rsv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Rsl_217 (rpoC)
Transcription machinery [BR:rsv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Rsl_217 (rpoC)
DNA repair and recombination proteins [BR:rsv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Rsl_217 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl_2 Peptidase_M23 RnfC_N
Other DBs
NCBI-ProteinID: AEV91851
Position
187340..191230
AA seq 1296 aa
MKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKSLPSRISTLLDMTMRDVEK
ILYFENYVVVDPGLSILQKGELLTEEELQKAKDKYGEDAFTASIGAEVIQQMLKELDFSK
LKQELYEELQTTSSEVKKKKLVKRLKLVENFLESENKPEWMIMDVLPVIPPEIRPLVMLD
GGRFATSDLNELYRRVINRNNRLKKLIESKAPDIIVRNEKRMLQEAVDALFDNGRRGRAA
KNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMALEL
FKPFIYSKLELYGIATTIKAAKRMVEAEKSEVWDVLEEVIREHPVLLNRAPTLHRLGIQA
FEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLEARVFMMSTNNILSPANG
RPIIVPDKDIVLGLYYLTLAFDNEVGAGMMFSDLAEMEHALYNKFITIHTKIKYRRNQLN
AEGKMVPVIIDTTYGRLMVGELLPSNPNIEFKFINKQLTKKDISLVIDLVYRHCGQKATV
IFADQLMKLGFKYACSSGISFGMDDMVVPESKSTHINETQLEIKEFEQQYSNGLITYGEK
YNKVVDAWSRCTDRVANDMMQEIATPPVNDAPNHQKINAIYMMAISGARGSFQQIKQLGG
MRGLMTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDTALKTASSGYLTRKLVD
VAQDCIITEKDCGTDKGIEVKSVIEGGEVIVPLAEKILGRTAAIDIFHPVTNDLILNKGE
LINEAKLEQIESAGLDRIMIKSVLTCESTTGICSICYGRDLATGTLVSEGEAIGVIAAQS
IGEPGTQLTMRTFHIGGAATKGAEVSSVDASYDAKVKIISRNVVINSEERKIVMSRNCEL
LLLDNNGNEKARHKIPYGARLLVDDGDMVIKTQKLAEWDPYTIPIITEKSGKVLFKDMVE
GISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDAKGEVITLSNGLEARYYLPVG
AVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHAVIAEIDGRVE
FGKDYKSKRRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGDLLIDGNLVLQDILKVM
GVEVLANYIVNEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTDSGGTTLLAGEKIDRHE
FDEINEKAMKNGLKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKVDKL
RGLKENVIVGRLVPAGTGYFMDKMRKAAVKLDEENV
NT seq 3891 nt   +upstreamnt  +downstreamnt
atgaaaaaccgtggcattacgtgtgagaaatgcggcgttgaagttacggtttctagagta
agacgtgaaagaatggggcatattgaacttgcagctcccgttgcccatatttggttttta
aagtcgctaccttcaagaattagtacacttcttgatatgacaatgcgagatgtagaaaag
attctttattttgaaaattatgtagtagttgacccagggctatcgattttacaaaaaggc
gaactcttaacagaggaagaattacagaaagcaaaagataagtacggtgaagatgcattt
actgcctctataggtgcagaagtaatacaacaaatgcttaaagagcttgatttttcaaag
ttaaagcaagagttatacgaggaattacaaaccacttcttcagaagtcaaaaagaaaaaa
ttagtaaagcgtttaaaattagtagagaattttttagagtcggaaaacaagccggaatgg
atgattatggatgttttaccggttattcctcctgaaattagaccgcttgttatgcttgac
ggcggaagatttgctacttcagacttaaatgaactttatagaagagtaattaatagaaat
aatcgtttaaagaaattaatagagtcaaaagctcctgatataatagtcagaaacgaaaaa
agaatgttacaagaagcggtggatgcgttatttgataacggtcgtcgcggtagagcagcg
aaaaatgctaataagcgtccatttaagtcattaagtgatatgcttaaaggtaagcagggg
cgtttccgtcagaacttgctaggtaagagggttgattactcaggacgttcggttatcgtg
gtaggacctgagcttaaacttcaccagtgcggtttacctaaaaaaatggctctggagtta
tttaagccgtttatttattctaagcttgagttgtacggcatcgctacaactattaaagcc
gctaaaagaatggtggaagctgaaaaatccgaagtgtgggacgtgcttgaagaggtaatt
agagagcatccggttttactgaatagggctccgacgttacataggcttggtattcaagca
tttgaaccgctattaattgaaggtaaagcgatccagcttcatccgcttgtgtgtgctgcg
ttcaatgcggattttgatggtgatcagatggcagtacatatcccgttatcgattgaagca
cagcttgaagctagggtatttatgatgtctacaaataatatcttaagccccgcaaacggt
cgtcctatcattgtaccggataaagatatagtgcttggtttatattatctaacccttgca
tttgataatgaagtaggcgcagggatgatgttctcagatttagctgagatggaacatgct
ttatataataaatttataactattcatacaaagataaaatatcgcagaaatcagttaaat
gccgaaggtaaaatggtccctgttatcattgatactacttacggtaggttaatggtcggt
gagttattgccttctaaccctaatatagaattcaagtttattaataaacaactaactaaa
aaagacatatcattagttatagatttagtttatcgtcactgcggtcaaaaagctacggta
atttttgccgatcagctaatgaaactaggttttaaatatgcttgttcttcaggtatttct
tttggaatggacgatatggtagtaccggaatctaagagtactcatatcaacgaaactcag
cttgaaataaaagaatttgaacaacaatattcaaacggtttaattacttacggagagaaa
tataataaagtagtcgatgcttggtcaagatgtaccgatagagtagcaaacgacatgatg
caagagattgctacgccgccggttaatgatgctccaaatcatcagaaaataaatgctata
tatatgatggctatttccggagcaagaggttctttccagcaaattaagcagctaggcggt
atgcgaggtttaatgaccaaatcaaacggtcaaattatacaaactcctattatctctaac
tttaaggaaggattaactgaatttgagtgttttaattctgctaacggaatgcgtaaaggg
caaatagatacggctttaaaaacggcaagctcaggttacttaacaagaaaattagtagat
gttgcacaagattgtattattactgaaaaagattgtggaactgataaaggaattgaagtt
aagagtgttattgaaggtggagaagttatagtacctttagctgaaaagattttaggtcgt
actgctgctattgatatatttcatccggtaactaatgatctaattctcaataaaggcgag
cttattaatgaagcaaagttagagcagattgagtcggcaggactcgacagaattatgata
aaatctgtattaacctgtgaaagtactaccggtatatgtagcatatgttacggtagggat
cttgctaccggtacattagtatcggagggtgaagcaatcggggttattgctgctcaatct
atcggtgaaccgggtacgcagcttacaatgagaactttccatatcggaggagcagcaaca
aaaggtgctgaggtttcttccgtagacgcttcctatgacgcaaaagtgaaaattataagt
cgtaacgttgtgattaattctgaagaacgcaaaattgttatgagccgaaattgtgaatta
ttattgcttgataataacggtaatgaaaaggctcgtcataaaattccatacggtgctaga
ttacttgttgatgacggtgatatggtgattaaaactcaaaaactagcagaatgggatcct
tatactataccgattatcacggagaagtcaggtaaagttttattcaaagatatggttgag
ggtatttctattcgtgacgtaactgacgaagctaccggaataccgagtaaagttattatt
gaatcaaagcaatattcacgcggtgcagaattacgtccgcgtatacagcttttagatgct
aaaggtgaagttatcaccttatcaaacggtttagaagctagatattacttgccggttgga
gcagttttaagcgtagaagacggagtacaaatatcggtaggtgatatcattgcacgtata
ccgaaagaatcaaccactactaaagatattaccggtggtttaccaagagttgccgagctt
gtagaagcaagacgccctaaagatcatgcagttattgccgaaattgacggtagagtagaa
ttcggtaaagactataaatctaaaagacgtattattatacatccgattgatgaaacaatg
tctattgagtatatggtaccaaaaggcaagcatgttgtagttaacgaaggtgactttgtt
aaaaaaggtgatttattgattgacggtaatctggtacttcaagatattttaaaagtaatg
ggcgtagaggttcttgcaaattatattgttaatgaggttcaagccgtttatcgtctacaa
ggtgtaaagattgatgataagcacatagaagttattatccgtcagatgttacaaaaagta
gaggttacggattcaggcggaactacgttattagcaggtgaaaaaatagatagacatgaa
tttgatgagataaatgaaaaagctatgaaaaatggtttaaaacctgctgaagcacaatta
atattacaaggtattactaaagcttctctgcaaactagatcgtttatctccgcggcatca
ttccaagagactactagagttttaactgaagcagctattgctggtaaagtagataagttg
cgaggactaaaagaaaacgtgatagttggacgattagtacctgctggaaccggttacttt
atggataaaatgcgtaaagcagccgtaaagcttgatgaagagaatgtataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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