KEGG   Raphanus sativus (radish): 108806676
Entry
108806676         CDS       T06014                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03030  DNA replication
rsz03410  Base excision repair
rsz03420  Nucleotide excision repair
rsz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108806676
   03410 Base excision repair
    108806676
   03420 Nucleotide excision repair
    108806676
   03430 Mismatch repair
    108806676
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rsz03032]
    108806676
   03400 DNA repair and recombination proteins [BR:rsz03400]
    108806676
Enzymes [BR:rsz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     108806676
    6.5.1.6  DNA ligase (ATP or NAD+)
     108806676
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     108806676
DNA replication proteins [BR:rsz03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    108806676
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     108806676
DNA repair and recombination proteins [BR:rsz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     108806676
   NER (nucleotide excision repair)
    Other NER factors
     108806676
   MMR (mismatch excision repair)
    Other MMR factors
     108806676
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 108806676
NCBI-ProteinID: XP_018434349
UniProt: A0A6J0JHL7 A0A9W3CMX5
Position
1:3385485..3389714
AA seq 784 aa
MLTIRPSNYFRCISSLYTKSLVSRFSSVSLSFNRPISHSPFTSPRRRAMSSSRPSAFDAL
MSNARASAAKKKTPQTSSSNPPPSPNKRKIAKTEDTDPPKTEDTGSDSAKPGSDPTPIAE
DSKKGAKKSRTLTQTDKIESLKSKIASLKKKPGEFDPERVSCWEKGERVPFLFVALAFDL
ISAESGRIVITDILCNMLRTVIATTPDDLVATVYLAANEIAPAHEGVELGIGEGSIIKAI
SEAFGRTEAQVKKQNTELGDLGLVAKGSRSSQTMMFKPEALTVVKVFNTFRQIAKESGKD
STEKKKDRMKALLVAATDCEPLYLTRLLQAKLRLGFSNQTVLAALGQAAVYNEEHSKPPP
NTKSPLEEAAKIVKQVFTVLPVYDIIVPALLNGGVWNLPKTCNFTLGVPIGPMLAKPTKG
VGEILNKFQDTVFTCEYKYDGERAQVHCMEDGTFEIYSRNAERNTGKYPDVAVALSRLKK
PSVKSFILDCEVVAFDREKKKILPFQILSTRARKNVNVNDIKVGVCIFAFDMLYLNGQQL
IQENLNIRREKLYESFEEDPGYFQFATTLTSSDIDEIQKFLDASVDIGCEGLIIKTLNSD
ATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGRGKRTGVFGAFLLACYDPDKEEF
QSICKIGTGFSEAVLEERSTSLRSRVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLT
ISPVHRAATGIVDPDKGISLRFPRLLRVREDKKPEDATSSEQIADMYQAQKHNHPSNDAK
GEDD
NT seq 2355 nt   +upstreamnt  +downstreamnt
atgttaacgattcgaccatccaattacttccgatgcatatcttctctctacactaaatcc
ctagtttctcgattctcctccgtctcgctctcctttaaccgtccaatctcccactccccc
ttcacctcgccccgccgcagagccatgtcctcctctcgcccctcggcattcgacgctctc
atgtcgaacgctcgagcatccgccgccaagaagaagaccccccagacatcctcctccaac
ccgcctccctcgccgaacaagagaaaaatcgcgaagaccgaagacaccgatccgcccaag
accgaggacacgggctccgattccgcgaaacccggatcggatccgactccaatcgcggag
gattcgaagaagggggcgaaaaagtccaggactttgacccagacggataagatcgagtcg
ctaaaaagcaaaatcgcgtcgctgaagaagaagccaggggagttcgatccggagagagtg
tcgtgctgggagaaaggggagagagttccgtttctgttcgtcgcgttggcgttcgatctc
atctcagccgagagtggtcggattgtgatcaccgacattctctgtaacatgctgagaact
gttatcgctacgactcctgacgatttggtcgctactgtttacctcgcggcgaacgagatt
gctcctgcgcacgaaggggttgagttggggattggtgaaggttctattatcaaggcgata
tctgaagcttttggtagaacggaggctcaggttaagaagcaaaacacggagcttggagac
ttggggcttgtagcaaaaggaagccgttcgtctcaaactatgatgttcaagccagaggca
ttgactgttgtcaaggttttcaacacatttagacaaatcgcgaaggaaagtggaaaagat
agtacagaaaagaagaaggatcgaatgaaggcactccttgtggcagcaacagactgtgaa
cctctctacttaactcgtttacttcaggcaaaattgaggttagggttttcaaatcagact
gtcttagctgctttagggcaggcagctgtttataatgaagagcactcaaagccaccccct
aataccaagtctcctttagaagaggctgcgaagattgttaaacaagtattcactgtactt
cctgtatatgacattattgttcctgctcttttaaatggtggtgtgtggaatcttcctaaa
acttgtaactttacactgggtgttccaatcggacccatgcttgcaaaaccaacaaaaggt
gtaggtgagatactgaataaattccaggacaccgttttcacatgcgaatacaaatacgat
ggagaacgtgcacaggtacattgtatggaggatggtacattcgagatatatagtcgaaat
gctgaaagaaacactgggaagtaccctgatgttgctgttgctttgtcaagattaaagaag
ccttctgtgaaatcttttattctggattgtgaggttgttgctttcgacagggagaaaaag
aagattctaccatttcagattttgagcactcgagcccgtaaaaatgtgaatgtcaatgat
atcaaagttggcgtatgtatctttgcttttgatatgttatatctaaatggccagcaactt
atccaggagaatcttaatattcgccgagagaaactatacgagtcatttgaggaagatcct
ggatatttccagtttgcaacaactctaacatccagcgatattgatgaaatacaaaagttt
ctagatgcgtccgttgatattggatgtgaagggttgatcattaaaacattgaattcagat
gctacctatgagcctgcaaagcgatcgaataattggctaaaactgaagaaagactatatg
gacagtattggggactctgtggatcttgtaccaattgctgctttccatggacgtggcaaa
cgcacaggtgtctttggtgcatttttgctagcttgctacgatcctgacaaggaagaattc
cagagcatttgtaaaataggtactggattttctgaagccgtacttgaagagcggtctacc
agtcttcgctctagagtgattgctactccgaaacaatactaccgagttggagacagcctc
aatccagatgtttggttcgaacccactgaggtctgggaagtaaaggcagctgacttgaca
attagccctgtacatcgtgcagctaccggcattgtcgaccctgataaggggatatctcta
cggtttcctcgtttactccgtgtacgagaagacaagaagccagaggacgcaacatcatct
gaacagattgctgatatgtaccaagctcagaaacacaaccatccgagcaatgatgccaaa
ggtgaagacgattga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (7)   
   KEGG ENZYME (3)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (39)   

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