KEGG   Raphanus sativus (radish): 108817142
Entry
108817142         CDS       T06014                                 
Name
(RefSeq) polyadenylate-binding protein 5
  KO
K13126  polyadenylate-binding protein
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03015  mRNA surveillance pathway
rsz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    108817142
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108817142
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsz03019]
    108817142
   03041 Spliceosome [BR:rsz03041]
    108817142
Messenger RNA biogenesis [BR:rsz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     108817142
   mRNA cycle factors
    Stress granule specific factors
     108817142
Spliceosome [BR:rsz03041]
 Complex C
  Other components
   Complex C specific factors
    108817142
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 Nup35_RRM RRM_occluded DUF2188
Other DBs
NCBI-GeneID: 108817142
NCBI-ProteinID: XP_056846257
UniProt: A0A9W3CKX1
Position
7:complement(11668686..11671537)
AA seq 662 aa
MAAAVASGIAPTTAMVDQVPNQPAATVASPHATQVAAVAAAAAEALQTHPNSSLYVGDLD
QSVNEAHLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPDDAMRAMDILNYTPIRER
PIRIMRSNRDPSTRLSGKGNVFIKNLDGTIDNKALYDTFSSFGTILSCKVAMDGTGKSKG
YGFVQYEKEETAQAAIDKLNGMLLNDKQVFVGPFVRRQDRTRESGAVPRFTNVYVKNLPK
EITDEELKKTFGKYGEISSAVVVKDESGNSRCFGFVNFESPEAAAVAVEKMNGISLGEDV
LYVGRAQKKSEREEELKRKYEQERLEKSNGTNLYVKNLDDGVNDDEKLKEMFSEYGTVTS
SKVMMNPEGLSRGFGFVAYSNPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTV
FSMRPNGPMGGFHHHPTGGPAAGPHHQIYMGQNGQGMVPSQPMGYGYQLQFMPGVRPGAG
PANYMMPYPLQRQNHPGPRVGFRRGAPNMQHHFQQQPQIMQHNGRYMGGVGNMMNRVEAS
APQGIIPLDASAISHNASQNQQRPALLPISKLTSALALASPANHSQILGEQLYPLVEKQE
PVHVAKVTGMLLEMDQAEILHLLESPEALKAKVAMALDVLRLSANPTAVSSVDDQFAPSS
TE
NT seq 1989 nt   +upstreamnt  +downstreamnt
atggcggcggcggttgcatctggaattgccccgacgacagcgatggttgatcaagtcccc
aatcaaccagcggctacggtcgcctctcctcacgcgactcaggtagctgccgtcgcggct
gcggcggccgaggcgttacaaacgcaccctaactcctccctctacgtcggagatttggac
caaagtgtcaacgaggcacatctgttggatctgttcaaccaagtggctcctgtccagaca
gttagggtttgtcgcgacttgactcgtcgttctcttggatacgcttacgtcaacttcgcc
aatcccgatgatgccatgcgagcaatggatattctgaactatactccgatcagagagaga
cccatcaggatcatgcgttcgaaccgtgacccgagcacgagactgagcggaaaaggcaat
gttttcatcaaaaacctggacgggaccatcgacaacaaagccctgtacgacaccttctcg
agtttcgggaccattctctcgtgcaaggtagccatggacgggacggggaagtcgaaaggc
tacggcttcgttcagtacgagaaggaagaaaccgctcaggcagccatcgacaagctcaac
gggatgctgctcaacgacaagcaagtctttgtgggaccctttgtccgacgtcaggacagg
actcgcgagagcggtgcggtcccgcgtttcactaacgtctacgtgaagaatcttcctaag
gagatcactgacgaggagctcaagaagacgtttgggaagtacggagagatctccagtgcg
gttgtggtgaaagatgagagtgggaactcgaggtgtttcgggtttgtgaatttcgagagc
cctgaggcggctgcggtagcggttgagaagatgaatgggatcagtcttggtgaggatgtg
ttgtacgttgggagggcgcagaagaagtctgagagggaagaggagctgaagaggaagtat
gagcaagagaggttggagaagtctaacggaaccaatttgtatgtgaagaatcttgatgat
ggtgtgaatgatgatgagaagctcaaggagatgttctctgagtatgggactgtgacctca
agcaaggtcatgatgaacccagaaggtttgagcagagggtttggttttgttgcttactcc
aatcctgaagaagctttaagagctttgaatgaaatgaatgggaagatgataggaaggaaa
cctctttacattgcttttgctcaacgcaaggaagagaggaggactcatcttcagactgtg
ttttctatgagaccaaatggaccaatgggtgggttccatcatcacccaacaggtgggcca
gctgcagggccacaccatcaaatttacatgggccagaacggtcaaggtatggtgccttca
cagcctatggggtatgggtaccaacttcagttcatgcctggtgtgcgtccgggtgctggc
ccggctaactacatgatgccttaccctcttcagaggcaaaaccaccctggtccccgtgtt
gggttcaggcgtggtgctcctaacatgcagcaccacttccagcagcagccacaaattatg
cagcacaatggaagatatatgggaggtgtgggtaatatgatgaatcgtgtggaagcatct
gctccacaaggcatcataccattggatgcatctgcgatctctcacaatgcttctcaaaac
caacagaggccagctctcctccccatttctaagctcacttctgccttggcattggctagc
cctgccaatcactcacagattcttggagagcagctttacccacttgtggaaaagcaggag
ccagttcatgtggccaaagtgacagggatgttgctggagatggaccaagctgagatcttg
caccttcttgagtcacctgaagctcttaaggccaaagtggctatggctctggatgtactc
aggctctctgctaatccgacagctgtttcttccgttgatgatcagtttgctccctcctca
acggagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system