KEGG   Raphanus sativus (radish): 108821944
Entry
108821944         CDS       T06014                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108821944
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rsz03041]
    108821944
Enzymes [BR:rsz01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     108821944
Spliceosome [BR:rsz03041]
 Complex C
  Other components
   Step II factors
    108821944
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N S1 DEAD AAA_22 AAA_19 nSTAND3 AAA_16 AAA_30 ABC_tran TsaE SLFN-g3_helicase PhoH T2SSE AAA_33 Sigma54_activ_2 ATPase Flavi_DEAD
Other DBs
NCBI-GeneID: 108821944
NCBI-ProteinID: XP_018450441
UniProt: A0A6J0KSF2
Position
8:10187389..10191598
AA seq 1077 aa
MMKKLNHLALVSHVCNELETHVGVGPKYLAEYIIHLGRNSETADELDKKLKKDDAELPDY
LVRSLLTAIRDIYPPPQPPKSKASAIKEDTKDRRDRDRDDRRSDRSREGGDRSRGGGRSD
RGANEPELYEVYKGRVTRVMDSGCFVQFDRFRGKEGLVHVSQMATRSVVKRDMEVYVKVV
SIKEGGKYSLSIKDVDQNTGTDLKKPSSYDDDDDLGRSNPSYRTKDGHVTKTGISGIRIV
KEINVAAPSRRRLKRMSSPERWEAKQLIASGALKATEFPDYDEDGDVMLYQEEEELEIEM
NEEVPAFLQGRTRYSADMSPVRVFKNPEGSLSRAAALQSALTKERREMREQQQRTVLDSI
PKDLNRPWEDPMPETGERHLAHELRGVGLSAYGMPEWKKDAFGKTPSFGKRSKLSIQEQR
ESLPIYMLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVA
AMSVAKRVAEEFGCRLGEEVGFAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSHYSVI
MLDEAHERTIHTDVLFGLLKKLLERRPDLRLIVTSATLDADKFSEYFFKCNIFIIPGRTF
PVEILYKKQPESDYLDAALNTVLEIHLTEPEGDILLFLTGQEEIDSACQSLYERMKSLGK
NVPELIILPVYSALPSEMQSRIFDPPPPGTRKVVVATNIAEASLTIDGIYYVVDPGFAKQ
NVYNPKQGLESLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTSIPEIQR
VNLGMTTLTMKAMGINDLLSFDFMDPPQPQALISAMEQLYSLGALDEEGLLTRLGRKMAE
FPLEPPLSKMLLASVDLGCSDEVLTVIAMIQTENIFYRPREKQAQADQKKAKFFQPEGDH
LTLLAVYEAWKAKNFSSQWCVENFIQSRSLRRAQDVRKQLLSIMDRYKLDVVSAGRNLTK
IRKAITAGFFFHGARRDQQEGGYRTLVENQPVYIHPGSALFQRQPDWVIYHDLVMTTKEY
MREVIVIDPKWLVELAPRFFKVADPTHMSKRKRQERIEPLYDRYHEPNSWRLSKRRG
NT seq 3234 nt   +upstreamnt  +downstreamnt
atgatgaagaaactaaaccacctagctctagtctcccacgtctgtaacgaactggaaacg
catgtaggtgtaggtccaaagtacttagcggagtacataatccatctcggccgcaactcc
gagaccgccgatgaactcgataagaagctgaagaaggacgacgcagagcttcctgattat
ttagtccgctcgctcttaactgcaatccgcgacatctaccctcctcctcagcccccaaaa
tccaaagcgtcagcgatcaaggaggatactaaggatcgaagggatcgggatcgagatgat
agaagaagtgatagatcacgtgaaggaggtgataggtcacgtggtggtggaagaagtgat
aggggcgcaaacgagcctgagttgtatgaggtttacaaaggtagagtgactagggtgatg
gactctggctgctttgttcagtttgataggtttagaggcaaagaaggtttggttcatgtt
tctcagatggctaccagaagtgtggtgaagcgggatatggaggtttatgtcaaagttgta
tctattaaagagggtggtaagtatagtctttccatcaaggatgttgatcagaacacgggt
acagacttgaagaagccttcttcatatgatgatgatgatgatttagggaggagtaatcca
tcgtatagaacaaaggatggccacgtcaccaagactgggatttcaggtatcaggattgtt
aaggagattaatgtagcagcaccttcacgcagacgactgaagaggatgagctcccctgag
agatgggaagcgaagcagctcattgcttctggtgccttgaaagctaccgagtttccagat
tacgatgaggatggagatgtgatgctttatcaggaggaagaagagcttgagattgagatg
aacgaagaagtacctgccttcttgcaagggcggaccaggtactctgctgacatgtctcct
gtcagggttttcaagaatccagaaggctccttgagccgtgctgctgcacttcagtctgcg
ctcaccaaggagaggagagaaatgagggaacagcagcagagaacagtgctcgactctatc
cccaaggatctgaatcgtccttgggaagatcctatgcctgagactggtgaaaggcatctt
gcacatgagcttagaggtgttggattgtctgcttatggcatgcctgagtggaagaaggat
gctttcgggaaaactccatcttttgggaaaagatcaaagctttctatccaggagcaaagg
gagagccttcctatatacatgcttaaaaaggagctgatacaggctgtccatgataatcaa
gtcttggtggtcattggtgaaactggttcaggtaagacgacacaggtgactcagtatctt
gccgaagctggttacactacgaaaggaaaaattgggtgtacgcagcctcgcagggtggca
gcaatgtctgttgcaaagagagtagctgaggagtttggttgtcgtttgggagaggaggta
gggtttgctatccggtttgaggattgtactggaccagacacggtgatcaagtacatgact
gatggtatgcttcttagggagattctgattgatgaaaacctctctcactactctgttata
atgcttgacgaagctcacgagcggacgattcacactgacgtcttgtttggtcttctaaaa
aagctgttggaacgcaggcctgaccttcgtctgattgtcacatccgccacgttagacgca
gacaaattctctgagtatttcttcaaatgcaacatctttataattcctggaagaaccttc
cctgtagagattctttataaaaaacagccagaaagcgattacttggatgcagctctgaac
acagttcttgagattcacttgactgagccagagggtgacattcttctctttttgacggga
caggaagagattgattctgcatgtcagtctctgtacgagagaatgaaaagtctaggcaaa
aacgttcctgaactcatcatactccctgtttacagtgcccttcctagcgaaatgcagtct
agaatatttgatcctcctcctcctggcacccggaaagtagttgtagctacaaacatcgca
gaagcttctttgacaatagatgggatatattacgttgttgatcccgggtttgcgaagcag
aacgtgtataatccaaagcaaggactagagtcgcttgtcataactccaatctcacaggca
tcagcgaagcagagagctgggcgtgctggtcgtactggccctgggaaatgttaccgtctc
tacacggagagcgcgtaccgtaacgagatgcctcctacgtcgatccctgagatccagagg
gttaacctgggaatgacaaccctcaccatgaaagcaatgggtatcaatgacctgttgtcg
tttgacttcatggatccaccccaaccgcaagccttgatctctgctatggagcagctgtac
agcctgggagctttggatgaggaaggactgttgacaaggctaggtagaaaaatggccgag
tttcctctcgagccaccgctctctaaaatgttgctagcgagtgtggatcttggttgcagc
gacgaggttttgacggtgattgctatgatccagacggaaaacatattttatagaccaaga
gagaagcaagctcaagcagaccagaagaaggcgaagtttttccagcctgaaggtgatcac
ttgacattgctagctgtgtatgaagcttggaaggctaagaacttctcaagccaatggtgt
gttgagaacttcatacagtcacggtcgttacgacgtgctcaagacgtgaggaaacagctt
ctcagcattatggacagatataaactagacgtggtaagcgcggggaggaacttgacgaag
ataaggaaagcaatcacggcaggattcttcttccatggagcaagaagagatcagcaggaa
ggaggttacaggacgctagtggagaatcaaccggtttacatacacccgggcagtgcattg
ttccaaagacaaccggattgggtgatatatcatgatcttgtgatgacgaccaaggagtac
atgagagaagtgattgttattgacccgaagtggcttgtggagctagctccaaggtttttc
aaggtggctgatccaacacatatgagcaagcgtaagcgccaggaacgcatagagcctctg
tatgatcgttatcacgagcctaactcatggcgtctcagcaaaagacgtggttga

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