KEGG   Raphanus sativus (radish): 108822446Help
Entry
108822446         CDS       T06014                                 

Definition
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37e
  KO
K03283  heat shock 70kDa protein 1/2/6/8
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03040  Spliceosome
rsz04141  Protein processing in endoplasmic reticulum
rsz04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108822446
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    108822446
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    108822446
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rsz01009]
    108822446
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rsz03041]
    108822446
   03009 Ribosome biogenesis [BR:rsz03009]
    108822446
   03110 Chaperones and folding catalysts [BR:rsz03110]
    108822446
   04131 Membrane trafficking [BR:rsz04131]
    108822446
   03051 Proteasome [BR:rsz03051]
    108822446
   03029 Mitochondrial biogenesis [BR:rsz03029]
    108822446
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rsz04147]
    108822446
Protein phosphatases and associated proteins [BR:rsz01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-5
    PP5-interacting proteins
     108822446
Spliceosome [BR:rsz03041]
 Complex B
  Other components
   Prp19 complex
    108822446
 Complex C
   Prp19-CDC5 complex
    108822446
Ribosome biogenesis [BR:rsz03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    108822446
Chaperones and folding catalysts [BR:rsz03110]
 Heat shock proteins
  HSP70 / DNAK
   108822446
Membrane trafficking [BR:rsz04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Other core components
    108822446
 Autophagy
  Chaperone mediated autophagy (CMA)
   Chaperones
    108822446
Proteasome [BR:rsz03051]
 Eukaryotic proteasome
  Assembling factors
   Other assembling factors
    108822446
Mitochondrial biogenesis [BR:rsz03029]
 Mitochondrial protein import machinery
  Endoplasmic reticulum membrane and cytosol
   Other ER-memrane and cytosol factors
    108822446
Exosome [BR:rsz04147]
 Exosomal proteins
  Proteins found in most exosomes
   108822446
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: HSP70 MreB_Mbl Hydantoinase_A FGGY_C
Motif
Other DBs
NCBI-GeneID: 108822446
NCBI-ProteinID: XP_018451023
Position
Unknown
AA seq 647 aa AA seqDB search
MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPINTVFDAKRLIGRRFSDASVQSDMKLWPFKIIPGPADKPMIVVSYKGEEKQFAA
EEISSMVLIKMREIAEAYLGVTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEP
TAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKSKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFY
SALTRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQGAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLI
QRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKK
KVEAKNALENYAYNMRNTIRDEKIGEKLPAADKKKIEDSVEEAIQWLDGNQTAEADEFED
KMKELESVCNPIIAKMYQGAGGEAGGMDDDEAPPSAGGAGPKIEEVD
NT seq 1944 nt NT seq  +upstreamnt  +downstreamnt
atggcgggtaaaggagaaggtccagctatcggaatcgacctcggcactacctactcttgc
gtcggagtatggcaacacgaccgcgtcgagatcatcgccaatgatcaaggaaacagaacc
acgccgtcttacgtcgccttcaccgactccgagaggttgattggtgatgccgctaagaat
caagtcgccatgaaccctattaacactgtcttcgatgcaaagagattgattggtcggaga
ttcagtgacgcatcagtccaaagcgacatgaagctatggcctttcaagatcatccctggc
cctgccgacaagcccatgatcgtcgtctcctacaaaggagaagagaagcagttcgccgcc
gaggagatatcttcaatggtgctcatcaagatgcgcgagatcgctgaagcttaccttggc
gtcaccatcaagaacgctgtggtcaccgtcccggcctacttcaacgactctcagcgtcaa
gccacaaaggacgccggagtgatcgctggtttgaacgtgatgcgtatcatcaacgagcct
actgctgcagccattgcttatggtcttgataagaaggcgacgagtgttggagagaagaac
gttttgatctttgacctcggtggtggtactttcgatgtctctcttttgactatcgaggaa
ggtatctttgaggtgaaggctaccgctggagacactcatctcggaggtgaggactttgac
aatagaatggtcaaccactttgttcaagagtttaagaggaagagcaagaaggacattagc
ggtaaccctagagctctgaggaggctgaggacggcttgcgagagagcgaagaggactctc
tcttccaccgctcagaccaccatcgagattgactctttattcgaagggattgatttctac
tccgcgctgacgcgtgctaggttcgaggagctcaacatggatcttttcaggaagtgtatg
gagcctgtcgagaagtgcttgcgcgatgctaagatggacaagagcacggtccacgacgtc
gtcctcgtcggtggctccacgcgtatcccgaaagttcagcagcttctccaagacttcttc
aacgggaaagagctctgcaagtctatcaaccctgacgaggccgtggcttacggagcggct
gtgcagggagctattctgagcggtgaagggaacgagaaggtgcaagatcttcttctgttg
gacgtgactcctctctctctcggtctcgaaacagccggtggtgtcatgaccacgttgatc
cagagaaacaccacgatcccgaccaagaaggaacaggtcttctcaacttactcggacaac
cagcctggcgtgttgatccaagtctacgaaggagagagggctaggaccaaagacaacaac
ctcctcgggaagttcgagctctctggcatccctccagctccacgtggcgtccctcagatc
acggtgtgtttcgacattgacgcgaacgggatcctcaacgtctctgcggaggacaagacc
acggggcaaaagaacaagatcacgatcaccaacgacaagggtcgtttgtctaaagacgag
atagagaagatggtgcaagaggcggagaagtacaagtctgaggatgaggagcataagaag
aaggttgaagccaagaatgcgctcgagaactatgcttacaacatgaggaacacgatccgg
gacgagaagattggtgagaagcttcctgctgcagacaagaagaagattgaggattctgtt
gaggaggcgatccagtggctcgacgggaaccaaacggctgaagcggacgagtttgaagac
aagatgaaagagctggagagtgtgtgtaatccgatcatagctaagatgtatcaaggagct
ggtggtgaagcaggtggaatggatgacgatgaagcccctccttctgcaggaggtgctggt
cccaagatagaagaagtcgactaa

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