KEGG   Raphanus sativus (radish): 108822503
Entry
108822503         CDS       T06014                                 
Name
(RefSeq) uncharacterized protein LOC108822503
  KO
K12875  apoptotic chromatin condensation inducer in the nucleus
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03013  Nucleocytoplasmic transport
rsz03015  mRNA surveillance pathway
rsz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108822503
  09122 Translation
   03013 Nucleocytoplasmic transport
    108822503
   03015 mRNA surveillance pathway
    108822503
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsz03019]
    108822503
   03041 Spliceosome [BR:rsz03041]
    108822503
Messenger RNA biogenesis [BR:rsz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     108822503
Spliceosome [BR:rsz03041]
 Complex C
  Other components
   EJC/TREX
    108822503
SSDB
Motif
Pfam: RSB_motif SAP GREB1_2nd
Other DBs
NCBI-GeneID: 108822503
NCBI-ProteinID: XP_018451108
UniProt: A0A6J0KU51
Position
Unknown
AA seq 603 aa
MSSSPFPILDNRPIDKWKVTELKEELKRRRLTTQGLKVDLVRRLDDALRAEQEAPQTLAN
QQAEIPHAPDVSVVTPDPMPAAFSIDTTPSEIQTTPVVKTTAAIETTPPPPPVVSKPEVN
ASGLDDVRGVAGLGGSVVDDVKVQEPQDADVKGGVGSGVTATDAVIADKAPQPTDTELEK
AATYNQVSVTGYEVKSDCISTDSVPTNEKMGNEIADDVKLETNVNKSQEPSAVTGGESHP
MDVEKPPEQKMSVGGGDVSDAAANAADVTKGNNTNISDAGDSEKLNLDRSSGDESMEDEP
ESKQTESVTSHEVVVDKSEKNDIVDDAGKGEALENKSHPLVASEKRKLPDNDQEAVGNNE
PVKRQRRWNSGSVKVPEAQATNSVAAPATTPMSTSLKRDFSRSNSSVSEDGPKERVVPPS
SKEPTDSLRIDRFLRPFTLKAVQELLGKTGNVTSFWMDSIKTHCYVSYSSVEEAAATREA
VYNLQWPPNGGRLLTADFVGSEEVKAKLEPSPPPPPQAKPQPQAQAPPSRPPATSLPPPP
PLAKAPPVIERLPPPPPLVAEEQEAPIVTLDDLFKKTKAIPRIYYLPLSEDQVAAKLAAN
NNK
NT seq 1812 nt   +upstreamnt  +downstreamnt
atgtcgtcatcaccttttccaatcctggacaaccgcccaattgacaagtggaaggttacc
gagttgaaggaagagctcaaaagacggagactaaccacacaaggcttgaaggtcgatttg
gtcaggcgtcttgatgacgcccttcgtgctgagcaggaagcgcctcaaaccctcgccaat
caacaggctgagattcctcatgcacctgatgttagtgttgttacaccagatccgatgcca
gcggcattcagcattgacaccactccatctgagattcagacaactcctgtggttaagaca
acagctgcgattgagacaacaccacccccacccccggtggtttctaaaccagaggttaac
gctagcggcctcgatgatgttagaggagtagctggtcttggtggttcagtggttgatgat
gtgaaggtacaagaacctcaggacgctgatgtgaaaggtggagtgggatctggtgtgact
gcaactgatgcagtaattgctgataaggccccccaacctacagatacggagcttgaaaaa
gctgctacgtacaaccaggtatcagttacagggtatgaggtaaagtctgattgtatttct
actgattctgtgccaactaatgaaaaaatgggtaacgaaattgctgatgatgtcaaatta
gaaacaaatgttaataagtcccaagagccatctgcagtcactggtggtgaatcccatccg
atggatgtggagaagccacctgagcagaagatgtctgttggaggtggagatgtcagcgat
gctgctgctaatgcagcagatgtgaccaaagggaataatactaatattagcgatgcaggc
gactcagagaagttgaacttagatagaagttctggtgatgagtctatggaggatgagcct
gagtccaagcaaaccgaatcagttacatctcatgaagtggtggtggataagtctgagaaa
aacgatattgtggatgatgctgggaaaggggaagcccttgagaataaaagtcacccactt
gtggcttctgaaaaaagaaagcttcctgataatgatcaagaagctgttggaaacaatgag
cctgtgaaaaggcaacgccgatggaactctgggagtgttaaggttcctgaagcacaggcc
actaatagcgtggcggcacccgctacaacaccgatgtcaactagtctgaagcgtgacttc
tcccgttctaactcttcggttagtgaggatggacctaaggaacgcgtggttcctccatca
tcgaaggagcctacggattccctcaggattgatcgtttccttaggccgttcacactgaaa
gctgttcaagagcttctgggtaaaaccggaaacgtcactagtttctggatggacagcatt
aagacccactgctatgtatcatattcttctgttgaagaagcggcagcaacaagagaagca
gtgtataacctccagtggccacctaacggaggtcgccttctgacagctgactttgttgga
tcagaagaagtgaaggcgaaactggaaccttctcctcctcctcctcctcaggctaagcct
cagccacaggctcaggctcctccttcacgcccaccagctacttctttgccaccaccaccg
cctttggccaaagcaccccctgtcattgaacgtcttccacctcctcctcctctagttgct
gaggaacaagaggctcccatagtcactctggatgatcttttcaagaagacgaaagctatc
cccaggatatattacttgcccttgtcagaggaccaagttgcagctaaacttgcagctaat
aacaacaagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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