KEGG   Raphanus sativus (radish): 108828213
Entry
108828213         CDS       T06014                                 
Name
(RefSeq) RNA-dependent RNA polymerase 2
  KO
K11699  RNA-dependent RNA polymerase [EC:2.7.7.48]
Organism
rsz  Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rsz03036]
    108828213
Enzymes [BR:rsz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.48  RNA-directed RNA polymerase
     108828213
Chromosome and associated proteins [BR:rsz03036]
 Eukaryotic type
  Gene silencing
   RNA interference (RNAi) pathway
    RDRC (RNA-directed RNA polymerase complex)
     108828213
SSDB
Motif
Pfam: RdRP
Other DBs
NCBI-GeneID: 108828213
NCBI-ProteinID: XP_018457329
UniProt: A0A6J0LCI3
Position
9:19741685..19745664
AA seq 1128 aa
MVSETTRSTLKLTNVPQTIVADELLRFLELHLGADSVFALEIPTSRDNWKPRDFALVQFA
SLEAKSRARLLSSQSKLLFKSRNLRVSEAYDDIIPRPVDPIKRLDGVVLTAGFPEAEEGR
FCALEKWGGVRCWVVEEKRRVELWVWESGDCYKCEVRFEDIVETVPCCVNGVSEINAFLL
RLKYGPKIYKQVSGPNIATKFKSDRYSFCKEDFDFMWIRSTDFSRVKSIGTSTCFCLEVD
NGSTMSDIFSSFPYYREDTLSLTTVDGNTFASANQIVPLLNTANLGIEIPYEILFQLNSL
VHAQKISLFAGSDMGLISILCGLSLETALTILKKLHQQSSICYDPISFVKAHSQSVVKKK
MAHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHASDFMRITFV
EEDWSKIPANALSVNSKEGYFVKPFRTNIYHRVLSVLGEGITVGPKKFEFLAFSASQLRG
NSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLNVRAQDVEQIPD
IEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHIPSAFQIRYGGYKGVIAVDRSSFRK
LSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDTVFEAMQEGHLSILG
NMLEDRHAALNVLQKLSGESSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRC
RILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELESREQSYFRKIDEETSVVVGKVVV
TKNPCLHPGDIRVLDAIYEVNFEQKGFLDCIVFPQKGERPHPNECSGGDLDGDQFFVSWD
EKLIPSQMDPPMDYAGSRPRIMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPE
KARSQKCIELANLHSRAVDFAKTGAPAEMPFALKPREFPDFLERFEKPTYISGSVFGKLY
RAVKSTLAQRKPEDAERENKMAYDSTLEAAGFESFIETAKAHRDMYAEKLSSLMNYYGAA
NEEEILTGILRTKEMYLQRDNRRYGDMKDRITLSVKDLQREAMGWFEKRCEDGQERKKLA
SAWYYVTYNPSHDDEKPKFLSFPWIVGDVLLGIKAESAERETEGMVIA
NT seq 3387 nt   +upstreamnt  +downstreamnt
atggtctcagagacaacgcgatcgactcttaaactcaccaacgtccctcagaccatagtc
gcggacgaactcctccgcttcctagagctccacctcggcgcagactccgtattcgccctc
gaaatccccacctctcgcgataactggaagccacgcgacttcgccctcgtgcaattcgcc
tccctcgaagccaagtcccgcgctcggctcctctcttcccagagcaagctcctcttcaag
tcccgtaacctaagagtctccgaagcctacgacgacatcatccctcgccccgtagatcca
atcaaaaggctcgacggcgtcgttttgaccgctggatttcccgaggcggaggaagggagg
ttctgtgccctagagaaatggggaggcgtgaggtgttgggttgtagaggagaagaggaga
gtggagctttgggtttgggagagtggagattgttacaagtgtgaggttaggtttgaggat
atcgttgaaactgttccctgctgcgtcaacggcgtctctgagatcaatgcctttcttctt
aggctgaaatatggaccgaagatatataaacaagtatcaggaccgaatatagccaccaag
tttaaatctgatcggtacagtttctgcaaggaggattttgatttcatgtggattcgctca
actgatttctcccgtgttaagtccatcggtacatccacttgcttttgtttggaagtggac
aacggctcaacgatgtctgacatcttctcaagcttcccttactatagagaagacactttg
agccttacaacagtggatgggaatacctttgcctctgcaaatcaaattgtccctctcttg
aatacagctaatctggggattgagattccatacgagatccttttccagctcaattcgctg
gttcacgcccagaaaatcagtcttttcgccggttcggatatgggattgatcagcatcctt
tgtggtttgagcttggaaactgcattgacgatcctcaagaaactgcaccagcaaagctct
atctgttatgatccaatctcatttgtcaaggctcattcacaatccgtggttaagaagaag
atggcgcattcccctgcatcagcctataagagattgactgagcagaacataatgagttgt
cagagagcttatgtcacaccttcaaagatttatctgttgggtccagagcttgagactgcc
aattacgttgtgaagaactttgcagagcatgcctcggatttcatgaggattacttttgtg
gaagaagattggagcaagattccagcgaatgcgctttctgtgaactcaaaggaaggctat
tttgtgaaaccctttagaaccaacatctatcacagggtgttgtcagtccttggagaaggt
atcaccgtcggccctaaaaagttcgagttcttggctttctcagcgagccagctgcgagga
aactccgtctggatgtttgcttctaacgagaaagtaaaagctgaagatataagagaatgg
atgggttgtttccgtaagatccgaagcatttctaaatgtgctgctaggatgggccagctg
ttcagcgcttcccggcaaacacttaatgtccgtgcgcaagatgttgagcagattcctgac
atagaagtgactactgatggtgctgactactgcttctcggatggcatagggaaaatttcc
ttggcatttgctaagcaagttgcacagaagtgtggactgagccatatcccttcagcattt
caaatccgatatggtggctacaaaggtgtgattgcagttgaccgcagttccttcagaaag
ctgtctctgcgtgatagtatgctgaaatttgattccaacaacaggatgctcaacgtgacc
aggtggacagagtcgatgccttgcttcttaaaccgggagatcatttgccttttgtcaact
ctcggaatagaagatactgtgtttgaggcgatgcaagaggggcatctatctatactgggg
aacatgcttgaagaccgccatgcggcactgaacgttctgcagaaactgagcggagaaagt
tccaagaatctgctagttaagatgctgctacaaggatatgcaccgagttcagagccttac
ctctcaatgatgcttcgtgtgcaccacgagagccagctttctgaactaaagagcaggtgc
aggatacttgtacccaaaggacggatcttgatcggatgcatggatgaaatgggtatactg
gagtatggccaagtgtacgttcgtgttacactgactaaagcggaactggaatcccgcgaa
cagagctacttccgcaagattgacgaggaaacatctgtggtggttggtaaagtggttgtg
acgaaaaacccttgtcttcaccctggtgacatcagagttcttgacgcaatatatgaggtc
aattttgaacaaaagggatttctagattgcatcgtctttcctcagaagggagagaggcca
catccaaatgaatgttctggtggtgatctcgatggagaccagttttttgttagctgggat
gagaagttgataccgagccaaatggaccctccaatggactacgctggaagcagacctcgt
ataatggatcatgatgtcaccttggaggaaatccacaagtttttcgttgactatatgata
agcgacacgctaggggtgatctcaactgcacatttggttcacgcagaccgtgacccggaa
aaagcccggagccagaaatgtatagagttggcaaaccttcactccagggctgttgatttt
gccaaaactggagctccagctgagatgccttttgccttaaagcccagagagttccctgat
ttcctggaacggttcgagaagccaacgtacatctctgggtccgtgtttgggaaactatac
cgtgctgtgaaaagcactttagctcagagaaagccagaagacgctgagagagagaacaag
atggcttacgactcaacacttgaagctgctggcttcgagagctttatagagacggcgaaa
gctcatagagacatgtatgctgagaaactgagctcgttgatgaactactacggagctgct
aacgaagaggagattctgacggggattttgagaaccaaggagatgtatctgcagagagac
aaccggaggtatggtgacatgaaggataggattacattgtcggttaaggatttgcagaga
gaggccatgggatggttcgagaagaggtgcgaggatggacaagagaggaagaagctagca
tcggcttggtactatgtaacatacaacccgagccatgacgatgagaagccgaaattcttg
agctttccgtggatcgtaggagacgttttgctggggataaaggctgaaagtgcggagaga
gagacggagggaatggtgatagcgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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