KEGG   Raphanus sativus (radish): 108828296
Entry
108828296         CDS       T06014                                 
Name
(RefSeq) DNA topoisomerase 1 beta
  KO
K03163  DNA topoisomerase I [EC:5.6.2.1]
Organism
rsz  Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rsz03032]
    108828296
Enzymes [BR:rsz01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     108828296
DNA replication proteins [BR:rsz03032]
 Eukaryotic type
  DNA Topoisomerases
   108828296
SSDB
Motif
Pfam: Topoisom_I Topoisom_I_N Topo_C_assoc UVR
Other DBs
NCBI-GeneID: 108828296
NCBI-ProteinID: XP_018457439
UniProt: A0A6J0LCT9
Position
9:8486557..8491620
AA seq 897 aa
MATEAFVKPVVPNGHDGYDDDDEDEMPLVFKRSSNSNNNNNTSSSSNRPRPNNNAQRSSS
IGSTKSPPPSSRSPLTSPNRSASSGRSSLMKPSSSSVKSPPVGEDRRSVASKERNGLGKA
PSVSKSDDEDDSEDDKPLSARLKGDTKQGSSSGRGSSQLPVQKSNVRPQGVNDNNSRNRD
SDEKVQTKTNVGASSSKPIHSDQKRPLVNHINRNGLKPKIEGNSSQGPAKRPLEKGNSSN
QSSVKRPKPSEPARPVKIEQGSRSTATTPDRKGNNLEDSKPLRVNQVEDNSDGDDHVPIA
SRMSSNKKASSAKPNASMIASSSRTIAKKPNKWVKDSKYSKSSRSLPSGDGQKKWKTLEH
NGVIFPPPYKRHGVKILYQGKPVDLTPEQEEVATMFAVMRETEYYNKQMFRDNFWNDWRK
ILGKNHVIKNLDDCDFSPIYEWYMQEKEIKKQMSAEEKRILKEEKLAQEEKYMWAVLDGV
REKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPCDITINIGKEAPVPECPIPGERWKEVK
HDNTVTWLAFWNDPINPKEFKYVFLAASSALKGLSDKEKYEKARKLKDRIGHIRAAYTKD
FSNKDVTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVDCIPPNKLKFDFL
GKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELMPALTAKVFR
TYNASITLDDMLSKETRDGDVPEKIVVYQQANKEVAIICNHQRTVSKSHGAQVEKLALKI
EELREQIKELDIDLDRAKKGRTPLMGSDGKRKRNLTPEALEKKIMQTNAKIEKMERDMQT
KEDMKTVALGTSKINYMDPRITVAWCKRHDVPIEKIFNKSLLAKFAWAMDVDPEFRF
NT seq 2694 nt   +upstreamnt  +downstreamnt
atggccactgaggcgtttgtgaaacctgtggtgccaaatggtcatgacgggtacgacgat
gatgatgaagatgaaatgcctttggttttcaagagaagcagtaacagtaacaataataat
aatacatcatcttcctctaatcgtccaaggcctaacaataacgctcagagaagttcttct
atcggttccaccaagtccccaccaccatcatcaaggtctcctttaacaagccccaataga
tcagcttcttccggaagaagttcactgatgaaaccgtcatcttcttctgtgaagtccccg
ccagtaggggaggatagaagatccgttgcctctaaggagaggaacggtttgggaaaggct
ccatctgtgtccaaaagtgatgatgaggatgattctgaggatgataagcctttgagtgcc
aggcttaaaggggataccaaacaagggagctcttccgggcgtggtagctcgcagctgcca
gtacagaagagcaatgtgaggcctcagggagtgaatgataataacagtagaaacagagat
tctgatgagaaagttcagacaaagaccaacgtgggtgcatcaagtagcaagcctattcat
agtgaccaaaagaggcccttggttaaccatatcaatcggaatggtttaaagcctaagatt
gaagggaatagttctcagggacctgcgaagagacctcttgagaagggaaactcttcgaat
caatcttctgttaaaaggcctaagccatcagagccagctagacctgtgaaaattgagcaa
ggctcgcgtagtacagctactacgccagataggaaaggaaataatctggaggactctaag
ccactgagagttaaccaagtagaagataactcagatggtgatgatcatgtccctattgcc
tcgaggatgagctcgaataagaaagcatcgtccgcgaagccaaatgctagtatgatagct
tcgtcatccagaacaatagctaagaagcccaacaaatgggtgaaagattctaagtattca
aagtcgtcgagatctttaccttccggagatgggcaaaagaaatggaaaacactagagcac
aatggtgttatttttccacctccatataaacgtcacggtgttaagatattgtatcaggga
aagcctgttgacttgactcctgaacaagaagaggttgccactatgtttgcggtgatgaga
gaaaccgaatactacaataaacagatgttcagagataacttctggaatgattggcggaag
atacttggaaagaaccatgtgattaaaaatcttgatgattgtgatttcagtcccatatat
gaatggtatatgcaggagaaggagataaagaaacaaatgagtgcagaagagaaaaggatt
ttgaaagaggagaagttagcgcaagaagagaagtacatgtgggctgttcttgatggcgtc
agagagaaggttggaaatttcagagttgaaccccctggcttgtttagaggccggggagaa
catcctaagatggggaaactgaaaaagcggattcgtccttgtgatattacaatcaacatc
ggtaaagaggcacctgttccagaatgtcctatccctggtgaaagatggaaagaagttaag
catgacaatactgtcacgtggcttgctttctggaatgatcctatcaatccaaaagagttc
aagtatgtattcttggcagctagcagtgcgttaaaggggctgagcgacaaggagaagtat
gagaaagcgaggaagcttaaggaccgtatagggcatattagagcagcatacaccaaagat
tttagtaacaaggatgtaacaaagcggcaaatagcggttgctacatatctcatcgataag
ctagcccttagggctggaaatgagaaggacgatgatgaggcagatactgtcggttgctgt
acattgaaagtaggaaacgtggattgcattcctccaaataagttaaagtttgacttcctt
ggtaaagactcgattcagtatgtaaacacagttgaagttgagcctcttgtttataaggct
attgggcagttccaagcgggaaaatcgaaaactgacgatctctttgacgagctagatact
tcaaaactgaatgctcatcttaaggaacttatgcctgctctcacagccaaagtattccgt
acatataatgcatccatcacattggatgatatgttgagtaaagaaacgagagatggagat
gttcctgaaaaaattgtggtttatcagcaagcaaacaaggaggtcgccatcatttgtaac
catcaacgtacagtctcaaaatctcacggagcacaagtggagaagctggctttgaaaata
gaagaactaagggagcaaataaaagagctggatatcgatctcgacagggctaagaaagga
agaacaccattaatgggctctgatggaaagagaaagaggaatttgacaccagaagctttg
gagaagaagataatgcaaacgaatgccaagatcgagaagatggaaagggatatgcagacc
aaggaagatatgaaaactgtagcattaggcacgtctaagatcaattacatggatcctagg
atcactgttgcatggtgcaaaagacatgatgttcccattgagaagatatttaacaagtct
ctcctggctaagtttgcttgggcaatggacgttgatcctgagttcagattctga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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