KEGG   Raphanus sativus (radish): 108862085
Entry
108862085         CDS       T06014                                 
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
  KO
K02999  DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    108862085
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsz03021]
    108862085
Enzymes [BR:rsz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     108862085
Transcription machinery [BR:rsz03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     108862085
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 CIS_TMP Med27
Other DBs
NCBI-GeneID: 108862085
NCBI-ProteinID: XP_018491618
UniProt: A0A6J0P6B6
Position
5:26333474..26341123
AA seq 1650 aa
MAQSTTEGASQVVKSVRFSFMTEEDVEKHSVMQVVNPVLLDNVLRPVPGGLYDPLMGPME
DRSTCKTCDQLGFDCSGHCGRIKLVCPIYHPLLFTHLFNLLQRTCFFCHHFMVKKEVVAR
CVSQLKLIMKGDVVSAKQLSLKPSNSSEEREDSKLTGSDEECEEDSDMGKQRWTSLQFAE
VSDVLNQFLRLKSRKCESCKAKPPKLEKPTFGWVRLDGMSARDIGANVMRGVKLKKSANS
GESSDEGEDSGISGLQEVEDGAKKKKGKSSKASKDYGDLKKASKRDLLPIEAKEILEGLW
DNEYEFCSFIGDLWQSGSEKTDCSMFFMESVLVPPTKFRAPTKGGDSVMEHPQTVGLNNV
LQANMALENAFTNKLDRSKTSSRWMSLQESVNVLFDSKTASVKSQREGTGICQLLEKKEG
LFRQKMMGKRVNHACRSVISPDPFIAVNDIGIPPCFALKLSYPERVTPWNVEKLRQAIIN
GPDIHPGATYYSDNVSTMKLPANKKARIAIARKLLSSRGVTTELGKTCDVNFEGKIVYRH
MQDGDVVLVNRQPTLHKPSLMAHIVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQD
EISRAEAYNIVNANNQYARPSNGDPLRALIQDHIVSSVLLTKGDTFLDKDEFNQLLFSSG
VTDMVLGSFSGRSGKKVTQSASNADLLIVTPAILKPVPLWTGKQVITAVLNEITKGHPPF
SVEKSTKLPVDFFNSRSREAKSKSGESNKKTKKHDFNEDKLLIRKNEFVRGVIDKAQFAD
YGLVHTVHELYGPNAAGNLLSVFSRLFTVFLQTQGFTCGVDDLIILKDVDEKRTNQLREC
EGVGEKVLRKTFGIDVNAQIDPEDMKSRIERVLYEDGELALASLDRSVVSELNQCSGKGV
MNDLLSDGLLKTPGTNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLP
CFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNL
ESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFIEKFKEMTINQDMFLQRCSEDMLSG
SSSYITDLPITLKKGAEKFVEAMPMKERIASKMVRQEDLLKLVKSKFFASLAQPGEPVGV
LAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGKT
KDDASQITDKLRKITVADIIKSIEVSVIPFAVHGGEVCSIHKLKINLYKPEHYPKHTDIT
EEDWEETMTVTFLRKLEDAIETHMKMLLRIRGIKVEKDSGPKSGNETDNDDSESGKKTGG
DDDDDDDEGEDKEADDLGADAQKEKQEATDEQDYEESDDDEKNEPSSVSGVVDPETDDDD
EDENAEVSKEDKEDAVEAKKEVKKNVQEGSKKKRQRFVSGEKDRHIFAEGKGKTFEVHFK
FHKNEPHILLAQVAQKTAQKVYIQNLGKIERCTVANCGDPQVIYYGDNPKERAEISNEEK
KASPALHASGVDFAGLWEFQDKLDVRYLYSNSIHDMLNTFGVEAARETIIREINHVFKSY
GISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEVD
RLETPSARICLGLPALTGTGCFDLLQRMDL
NT seq 4953 nt   +upstreamnt  +downstreamnt
atggctcaatccaccacagagggagcttcccaagtggtgaaatccgttaggtttagcttc
atgacagaggaagatgtcgaaaagcacagtgttatgcaagttgtaaaccccgtcttgctc
gataacgttttgagacctgtccctggtggtctctatgatcctcttatgggtccaatggaa
gatagatcaacttgtaagacgtgtgatcagctcggttttgattgctcaggacattgtggg
cgtataaagcttgtctgtcctatctaccaccctttgctgttcactcaccttttcaatctt
ttgcaaaggacttgtttcttctgtcatcactttatggtcaaaaaggaagtggttgcaaga
tgcgtctctcagttgaaactcatcatgaaaggtgatgtagtttccgctaagcagctgtct
cttaaacccagtaattcatctgaagagcgcgaagattctaaactcactggttcagatgaa
gaatgtgaagaagattctgacatgggaaaacagagatggacatctcttcagtttgctgaa
gtctctgacgtcttgaatcagtttcttaggttgaaatcaagaaagtgtgaatcttgcaaa
gcaaagcctcctaaactagagaagcctaccttcggatgggttcgcttggatggtatgtca
gcgagagacattggagctaacgtaatgcgaggggttaagctaaagaagtccgctaacagt
ggggaaagctctgacgaaggtgaagacagtggtatcagtggattacaagaagttgaagat
ggtgctaaaaagaaaaaaggaaaatcttcaaaagcatctaaagactatggagatctcaag
aaagcctctaaaagagaccttttgccgattgaggccaaggaaatcttagaaggtttgtgg
gataatgagtatgagttttgctccttcattggtgatctttggcagagtggatctgaaaaa
acggactgttctatgttctttatggagagtgttcttgtgccgcctactaaatttagagct
ccaacaaaaggaggtgatagcgttatggaacatcctcaaaccgtagggctaaacaatgtc
ttgcaagccaatatggcccttgagaatgccttcactaacaaattagatcgatccaagaca
tcttccagatggatgagtcttcaagaatcagtcaatgtcctgtttgatagcaagactgcc
tcagttaaaagccagagagagggtactggtatatgtcaattgctggagaagaaagagggt
ctgtttcggcaaaaaatgatgggaaagagagtgaatcatgcatgcagatctgtgatatct
ccagatccttttatcgctgtcaatgacattggaattcctccttgctttgctttgaaattg
agctatcctgagagggtgactccttggaatgttgaaaagttgaggcaggcaatcattaat
ggtcctgacattcacccgggagcaacatattactctgacaacgtatctacaatgaagctg
cctgctaacaaaaaagcacgaatagcaattgcaagaaagctactgtcctcacgaggagtc
actactgaacttgggaaaacttgtgatgtcaactttgaaggtaaaattgtctatcgacat
atgcaagatggtgatgtcgtccttgtgaatcgtcagccaacattacataaacctagtctt
atggctcacattgtccgtgttctcaagggggaaaaaacacttcgtctccattatgcaaat
tgcagtacatacaatgcagattttgatggggatgagatgaatgtgcattttccacaagat
gagatttcacgagctgaggcctacaatattgttaatgccaacaaccaatatgccaggcct
tctaatggtgatccacttcgagctttaattcaggatcacattgttagttcggttttactt
actaaaggggacacctttttggacaaagatgaattcaatcagcttctcttcagttccggc
gtgactgacatggtactcggttctttttctggacgatctggcaagaaagtcacacaatca
gcttctaatgcagacctgttgattgtcacgcctgccattttgaaaccagtacctctttgg
accggaaagcaggtcatcacggcagtgttaaatgagataaccaaaggtcatcccccattc
agcgtagagaaatctacaaaacttccggttgacttcttcaattctagatcaagagaagca
aaatctaaaagtggagaatccaacaaaaagaccaagaagcatgattttaatgaagataaa
ctgctcatcagaaaaaatgaatttgtccgtggcgtgattgacaaggctcagtttgcggac
tatgggttggttcatacagtgcatgagctctatggtccaaatgctgcaggaaacctgctt
tctgtttttagtcgtctcttcacagtcttccttcagactcaaggtttcacatgtggagtt
gatgatcttattattttgaaagatgtggatgaaaagaggacaaaccaacttcgagaatgt
gaaggggttggtgaaaaagtactccgtaagacctttggcattgatgttaatgctcagata
gatcctgaggacatgaaatccagaattgagcgagttctgtatgaggatggcgaacttgct
ttggcatcactggataggagcgtcgtaagtgagctcaaccagtgttcaggcaagggggtg
atgaacgatttgctctctgatgggttgttgaaaacacctggaacgaattgtatctctctg
atgacaatatctggagctaagggtagtaaggttaatttccagcaaatttcttctcacctt
ggccagcaagatttagaaggaaaaagagttcctcgaatggtttcggggaagacattacct
tgcttccacccatgggattggtcacccagagctggaggttttattagtgacagattcctt
agcggtcttcgcccccaagaatactactttcattgtatggctggacgagaagggttagtt
gatactgcagtgaagacatcacgtagtgggtatctgcagagatgtttgatgaaaaatctt
gagagcctgaaagtcaactatgattgtacagtacgggatgctgatgggtccatcattcag
ttccaatatggtgaagatggcgtggatgttcatcggtctagcttcattgaaaagttcaaa
gaaatgacaataaatcaagatatgttccttcaaagatgtagcgaagacatgctgtctgga
tcgagtagttacataacagatcttcctattactcttaagaagggagctgagaagtttgta
gaggcgatgcctatgaaagaacgtattgcttctaaaatggtgagacaggaagatcttctg
aagctggtcaagtcaaaattctttgcaagtctcgcccagccaggggagcctgtaggtgta
cttgctgcacaatctgtaggagagccatcaacacagatgacgttgaatactttccatctt
gctggacgtggagagatgaatgtgacactcggaatcccacgtttacaagagatcttgatg
actgctgctgcagacattaagacacccatcatgacttgcccgttgctgaagggtaaaaca
aaggatgatgcaagtcaaattactgataagttgaggaagatcacagtagcagatattata
aagagtatagaagtgtccgttataccatttgcagttcatgggggtgaggtttgcagtatc
cacaagcttaagataaatctgtataagccagagcattatccaaagcacacagatattact
gaagaagactgggaagagacgatgacggttacgtttttgaggaagctggaagacgctata
gagactcacatgaaaatgctccttagaatcagaggcataaaggttgagaaagacagcggt
ccaaaatcaggaaacgaaacggataacgatgattccgagagtggaaagaagaccggaggc
gatgatgatgatgatgatgatgagggagaggataaagaggctgatgatcttggtgcagat
gcgcagaaagagaagcaggaagcgacagatgagcaggattacgaggaaagtgacgacgat
gagaagaatgaaccatcttcggttagtggagtagttgaccctgagacggatgatgatgat
gaggatgaaaacgcagaagttagcaaggaagacaaggaagatgctgttgaagcgaagaaa
gaagtaaagaagaatgttcaagaaggtagtaaaaagaagagacagagatttgtcagtggt
gaaaaagacagacatatctttgctgaaggcaaaggaaagacatttgaggtccatttcaag
tttcataaaaacgagcctcatatattacttgctcaggttgctcagaaaacagcgcagaaa
gtttacatccagaaccttggaaagatcgaacggtgcacggtggctaactgtggtgatcct
caggtgatatactacggagacaatccaaaggagagagcagagatctccaacgaagaaaag
aaagcctcaccagctctccacgcgtcaggagtcgatttcgccggtctctgggagtttcaa
gataagctcgacgtcaggtacttgtacagcaacagcattcacgacatgctcaacactttt
ggagtggaagcagcgagagagacgataatcagggagataaaccacgttttcaaatcttac
ggtatctccgttagcatcagacacttgaacctcatcgcggactacatgacgttctctggt
ggataccgtccgatgagccgtatgggaggaatcgcggaatcaacttctcctttctgcagg
atgacgtttgagacggcaactaagttcattgtccaagcggctacttatggagaagtggac
aggcttgaaactccctcggctagaatatgtcttggcttgcccgctctcacgggaacgggt
tgcttcgacttgttgcagagaatggatctctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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