KEGG   Ramlibacter tataouinensis: Rta_28340
Entry
Rta_28340         CDS       T01544                                 
Symbol
lysU
Name
(GenBank) candidate lysyl-tRNA synthetase (Lysine--tRNA ligase)
  KO
K04567  lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Organism
rta  Ramlibacter tataouinensis
Pathway
rta00970  Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:rta00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    Rta_28340 (lysU)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01007 Amino acid related enzymes [BR:rta01007]
    Rta_28340 (lysU)
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rta03016]
    Rta_28340 (lysU)
Enzymes [BR:rta01000]
 6. Ligases
  6.1  Forming carbon-oxygen bonds
   6.1.1  Ligases forming aminoacyl-tRNA and related compounds
    6.1.1.6  lysine---tRNA ligase
     Rta_28340 (lysU)
Amino acid related enzymes [BR:rta01007]
 Aminoacyl-tRNA synthetase
  Class II (A)
   Rta_28340 (lysU)
Transfer RNA biogenesis [BR:rta03016]
 Eukaryotic type
  Aminoacyl-tRNA synthetases (AARSs)
   Multi-aminoacyl-tRNA synthetase complex (MSC)
    Rta_28340 (lysU)
 Prokaryotic type
   Other AARSs
    Rta_28340 (lysU)
SSDB
Motif
Pfam: tRNA-synt_2 tRNA_anti-codon
Other DBs
NCBI-ProteinID: AEG93937
UniProt: F5Y5Q3
Position
3018922..3020451
AA seq 509 aa
MSDVHSSHNPAPDDNQLIAERREKLKALREAQKAGGGVAFPNDFKPSDHAATLLQRHGHK
EAPQLEAEGITARVAGRMMLKRVMGKASFATLQDATGRLQVYVTRDGVGEEVYAAFKHWD
LGDVVGCEGKVFKTKTGELSVNATSIRLLTKSLRPMPDKFHGVADQEVKYRQRYVDLMTD
EDARRRFVARSKAVAGIRDFMVQHGFLEVETPMLHPIPGGANARPFVTHHNALDQEMFLR
IAPELYLKRLIVGGFERVFEINRNFRNEGISVRHNPEFTMMEFYAAYWNYRDLMDFTEAL
VRDAAQKAVGTLQLTYGGRPVDLAQPFARLTIREAIVAHTGAGDNVDNRDWLTGALRKAG
LTEEKHGLAGRSLASLQVLYFEETVEEKLWQPTFIMEHPTEISPLARANDQRPEVTERFE
LYITGREFGNGFSELNDAEEQTARFAAQVNAKDAGDDEAMFFDHDFVRALEYGMPPTGGC
GIGIDRLMMLLTDSPSIRDVILFPALRRE
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtccgacgtccacagttcgcataatccggctcctgacgacaaccagctgatcgccgag
cgccgcgaaaaactcaaggccttgcgcgaagcgcagaaggccggtggcggcgtcgccttc
ccgaacgacttcaaaccctccgaccacgcggccacgctgctgcagcggcacggccacaag
gaagcaccgcaactggaagccgagggcatcaccgcgcgcgtcgccggccgcatgatgctc
aagcgggtgatgggcaaggccagcttcgccaccctgcaggacgccaccggccgcctccag
gtgtacgtgacccgcgacggcgtgggcgaggaggtgtacgccgccttcaagcactgggac
ctgggcgacgtcgtgggctgcgagggcaaggtcttcaagaccaagaccggcgagctgtcc
gtcaacgccacgtccatccggctgctcaccaagagcctgcggcccatgccggacaagttc
cacggcgtggccgaccaggaggtcaagtaccgccagcgctacgtggacctgatgaccgac
gaggacgcccgccggcgcttcgtcgcgcgcagcaaggccgtggccggcatccgcgacttc
atggtgcagcacggcttcctggaggtggagacgcccatgctccaccccattcccggcgga
gccaacgcacggcccttcgtgacgcaccacaacgcgctggaccaggagatgttcctgcgc
atcgcacccgagctgtacctcaagcgcctgatcgtcggcggcttcgagcgcgtgttcgag
atcaaccgcaacttccgcaacgaaggcatctcggtgcgccacaaccccgagttcaccatg
atggagttctacgcggcgtactggaactaccgcgacctgatggatttcaccgaagccttg
gtgcgcgacgcggcccagaaagcggtgggtaccctgcaactcacctatggcggcaggccg
gtggacctggcgcagcccttcgcgcggctgaccatccgcgaggccatcgtcgcgcacacc
ggggcgggcgacaacgtcgacaatcgcgactggctgaccggcgcactgcgcaaggccggc
ctcaccgaggagaagcacgggctggcgggccgctcgctggccagcctgcaggtgctgtac
ttcgaggagacggtggaagaaaagctctggcagcccacgttcatcatggagcaccccacg
gagatctcgccgctggcccgcgccaacgaccagcggcccgaggtgaccgagcgcttcgag
ctgtacatcaccggacgcgagttcggcaacggcttctccgagctcaacgacgccgaggaa
cagacggcgcgcttcgccgcccaggtcaacgccaaggacgcgggcgatgacgaggccatg
ttcttcgaccacgacttcgtgcgcgcgctggagtacggcatgccgcccacgggcggctgc
ggcatcggcatcgaccggctgatgatgctgctcaccgacagccccagcatccgcgacgtg
atcctgttcccggcgctgcgccgggaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (25)   

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