KEGG T01544: Rta

Ramlibacter tataouinensis: Rta_34120

Entry

Rta_34120         CDS       T01544

Symbol

phrB

Name

(GenBank) Candidate deoxyribodipyrimidine photolyase (photoreactivating enzyme)

K01669

deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]

Organism

rta Ramlibacter tataouinensis

Brite

KEGG Orthology (KO) [BR:rta00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rta03400]
    Rta_34120 (phrB)
Enzymes [BR:rta01000]
4. Lyases
  4.1  Carbon-carbon lyases
   4.1.99  Other carbon-carbon lyases
    4.1.99.3  deoxyribodipyrimidine photo-lyase
     Rta_34120 (phrB)
DNA repair and recombination proteins [BR:rta03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   Direct repair
    Rta_34120 (phrB)
Prokaryotic type
    Rta_34120 (phrB)

SSDB

Motif

Pfam:

FAD_binding_7 DNA_photolyase TusA

Other DBs

NCBI-ProteinID:

AEG94525

UniProt:

F5XZG8

Position

3623128..3624621

AA seq 497 aa
MDKNYPAGLMWFRRDLRSHDNAALFRALKACRQVHCVFVFDTGILDALPRQDRRVEFIRE
SLVELDAALRAAAQDQGAGLIVRHAAARQEIPRLARELGVQAVFANHDYEPQALARDAAV
RGALADAGIALHTYKDQAIFERSEVLTQAGKPYAVFTPYKNAWLAKADAFFLSSYPVQAY
AAALAPRPTPHRQPVPALAQLGFERSNLSELPLPVGMSGGRALFEEFRGRMGGYHQSRDF
PAVRGPSYLSVHLRFGTVSIRELARTAHGLAQDGDAGATTWLSELIWRDFYFQVLANFPH
VVDESGQGHSFRREYDAIAFERGAHADELFAAWCEGRTGYPLVDAAMLQLNQTGYMHNRL
RMVTASFLCKDLGIAWQRGERYFALQLNDYDLSANNGGWQWASSSGCDAQPYFRIFNPVS
QSRKFDPEGRFILKYLPQLAGLPEAVLHAPWTASPVELAAAGLALGRDYPAPVVDHEAAR
EQTLRRYAVVKKGAAGA

NT seq 1494 nt +upstreamnt +downstreamnt
atggacaagaactaccccgccgggctgatgtggttccgccgcgacctgcggtcccatgac
aacgccgccctcttccgcgcgctcaaggcctgccgccaggtgcactgcgtgttcgtcttc
gacaccgggatcctggatgcgctgccgaggcaggaccggcgggtggaattcatccgcgag
tctctggtggagctggacgcggccctgcgcgcggcggcgcaggaccaaggcgccggcctg
atcgtgcgccatgcggcggcccgccaggagatcccccgcctggcccgcgagctgggcgtg
caggcggtcttcgccaaccacgactacgaaccgcaggcgctggcacgggacgcggcggtg
cgcggggcgctggccgacgccggcatcgcgctgcacacctacaaggaccaggcgatcttc
gaacgcagcgaggtcctgacccaggccggcaagccgtacgccgtgttcacgccctacaag
aacgcctggctggccaaggcggatgccttcttcctgagctcctacccggtgcaggcgtac
gcggccgctttggcgcctcggccgactccgcaccggcagccggtgcccgcgcttgcacag
ctgggcttcgagcgcagcaacctgtcggaattgccgctgccggtagggatgagcggcggc
cgggccctgttcgaggaattccgcgggcgcatgggcggctatcaccagagccgcgacttc
ccggcggtgcgcggccccagctacctcagcgtccacctgcgcttcggcaccgtgtcgatc
cgcgagctggcgcgcacggcccatgggctggcgcaggacggcgatgccggcgccaccacc
tggctcagcgagctgatctggcgcgatttctatttccaggtgctggcgaacttcccgcac
gtggtggacgaatccggccagggccacagcttccggcgcgagtacgacgccatcgccttc
gaacgcggcgcgcacgccgatgaactgttcgccgcctggtgcgaaggccgcaccggctac
ccgctggtggacgcggccatgctgcagctgaaccagaccggctacatgcacaaccggctg
cgcatggtcacggccagcttcctgtgcaaggacctggggatcgcctggcagcgcggcgag
cgctacttcgccctgcagctcaacgattacgacctgtcggccaacaacggtggctggcag
tgggccagctcgtccggctgcgacgcgcagccgtacttccgcatcttcaacccggtcagc
cagagccgcaagttcgatcccgagggccggttcatcctgaagtacctgccgcagctggcc
ggtctgccggaggccgtgctgcatgcgccctggactgcctcgccggtggaactggccgcg
gccggtctggccctgggccgcgactatcccgcccccgtggtggaccacgaagcggcacgc
gagcagacgctgcgccgctatgccgtggtgaaaaagggcgcggccggggcgtag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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