KEGG   Rickettsia typhi B9991CWPP: RTB9991CWPP_02495
Entry
RTB9991CWPP_02495 CDS       T01810                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rtb  Rickettsia typhi B9991CWPP
Pathway
rtb03410  Base excision repair
rtb03430  Mismatch repair
rtb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rtb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    RTB9991CWPP_02495
   03430 Mismatch repair
    RTB9991CWPP_02495
   03440 Homologous recombination
    RTB9991CWPP_02495
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rtb03400]
    RTB9991CWPP_02495
DNA repair and recombination proteins [BR:rtb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     RTB9991CWPP_02495
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     RTB9991CWPP_02495
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      RTB9991CWPP_02495
SSDB
Motif
Pfam: DHHA1 DHH RecJ_OB
Other DBs
NCBI-ProteinID: AFE55202
Position
complement(656183..657943)
AA seq 586 aa
MKPQISINGKIWKQKQIKEDIVTELCRSFKISDLLARIVSLRVNNLAEVENFLIPKIKNL
LPDPFHLLDMDKAVDRIVQAIVHNQQICIFADYDVDGATSAALLKHLLRDLNIICDIYVP
DRIYEGYGPTPLAIQKIKDNGTELLITVDCGAMAHDALKYAKDVKLDVIVIDHHISTAIL
PDAVAIVNPNRIDETSEYKYLAAVGVTFLFATAILSNLKKRNYFSQSIPTPNLMQYLDLV
ALGTVCDMMKLTGLNRAFVATGLKVMQQRQNIGIKTLYDIAGINEIPQCYHLGFILGPRI
NAGGRVGKSNLGANLLATSCHNEASKLANELEKYNNERKVIELLMIDEAIDIALTQKDSS
LLFVVKEGWHPGVIGIVAGRLKEKFDKPVAVVALNNGIGKASCRSILGIDFSAEIINAKS
KDLIIAGGGHAMAAGFTVTAGKLEELQDFLNNAFSISINKLANYKHAEYDIDLTVNSVNF
YLMEELKILEPFGSGNHEPIFKFDDLFILKADIVGSKHIKCMLAPDKRGFGNKVLSAIAF
DAVGTPFEDILLSSRAKHISAIGTLKTNNWKDNYTIQLIIKDLLLK
NT seq 1761 nt   +upstreamnt  +downstreamnt
atgaaaccacagatatctataaatggtaaaatatggaaacagaagcaaattaaagaagat
atagtaacggaattatgtcgtagttttaaaattagtgatctacttgctagaatagtatca
ttaagagtcaataatttagcggaagtagaaaattttttgataccgaaaatcaaaaattta
ttacctgatccttttcatctacttgatatggataaggcagtcgatagaatcgttcaagct
attgtacataatcaacaaatctgtatctttgcagattatgacgtagacggtgctacttca
gcagcgttacttaagcatcttttacgagatttaaatataatatgtgatatttatgttcct
gatcgtatatatgaaggatacggtccaacgcctttagctatacaaaaaattaaagataat
ggaactgaattattaattacggttgattgtggtgctatggcacatgatgcattgaaatat
gcaaaagatgttaaacttgatgttatagtcattgatcatcatatttctactgcaatatta
ccggatgcagtagctatagtaaatccaaatcgtattgatgaaacaagtgaatataaatat
ttggccgcagtaggtgttacgttcttatttgcaactgcaatattatcaaatttaaagaag
cgcaattatttctcgcaaagcataccgactcctaacttaatgcagtatctagatttagtt
gcccttggtactgtttgcgatatgatgaaattaacaggtttgaatcgtgcatttgtcgca
actggattaaaagtaatgcagcaaagacaaaatatcggtattaaaacattatatgatatt
gcagggattaatgaaataccgcaatgttatcatttaggttttattttaggtcctcgtata
aacgcaggtgggagagtaggtaagtcaaatttaggtgctaatcttttagctactagttgt
cataatgaagcaagcaaattagctaatgaactggaaaaatataataatgagcgtaaagta
attgagttattaatgatcgacgaggccatagacattgctttaactcaaaaagatagtagt
ttattatttgttgtgaaagaaggatggcatccaggtgttatagggatcgttgcaggaaga
ttaaaagaaaaatttgataagccagtagcagttgtggctttaaataacggtattggtaaa
gcttcatgtcgttcaattttaggtattgattttagtgctgaaattatcaatgctaaaagt
aaagatttaataatagccggtggaggtcatgctatggcagcaggatttaccgtaactgct
ggcaaattagaagaattgcaagattttttaaataatgcttttagcattagtataaataaa
ttagcaaattataaacatgctgaatatgatattgatttaacggttaatagtgtgaatttt
tatttaatggaggaattaaaaattttagagcctttcggttcaggaaatcatgagccaata
tttaaatttgatgatttatttatattaaaagctgatatcgttggaagtaaacatattaaa
tgtatgcttgcgccagataagcgaggctttggtaataaagtattgtctgctattgctttt
gatgctgtaggtactccatttgaagatatcttattaagttctcgcgcaaaacatatttct
gcaataggcacgttgaaaacgaataattggaaagataattatactattcagttaattata
aaagatttactgttaaaatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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