KEGG   Rickettsia typhi B9991CWPP: RTB9991CWPP_03395
Entry
RTB9991CWPP_03395 CDS       T01810                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rtb  Rickettsia typhi B9991CWPP
Pathway
rtb03030  DNA replication
rtb03410  Base excision repair
rtb03420  Nucleotide excision repair
rtb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rtb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RTB9991CWPP_03395 (ligA)
   03410 Base excision repair
    RTB9991CWPP_03395 (ligA)
   03420 Nucleotide excision repair
    RTB9991CWPP_03395 (ligA)
   03430 Mismatch repair
    RTB9991CWPP_03395 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rtb03032]
    RTB9991CWPP_03395 (ligA)
   03400 DNA repair and recombination proteins [BR:rtb03400]
    RTB9991CWPP_03395 (ligA)
Enzymes [BR:rtb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     RTB9991CWPP_03395 (ligA)
DNA replication proteins [BR:rtb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     RTB9991CWPP_03395 (ligA)
DNA repair and recombination proteins [BR:rtb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     RTB9991CWPP_03395 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RTB9991CWPP_03395 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     RTB9991CWPP_03395 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      RTB9991CWPP_03395 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT PX
Other DBs
NCBI-ProteinID: AFE55382
Position
complement(902908..904989)
AA seq 693 aa
MQNIDLISEKEAKKLLEELADKIAMYNHAYYIEDNPLVSDSEYDQLFNLNLKLENTFPHL
VLSNSPSKKIGAKITNKFAKVIHQAPMLSLSNAFDEEDIRDFLERIKNFLRINEFTPIFC
EPKIDGLSFSAIYKHGLFITGATRGDGYVGEDITINIKTIKNFPHKIDNAPEFLEVRGEI
YIEKQDFVNLNKEQEAQNRGKFANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTEKNL
ASTQEQLLAKLKALSFSVNEISKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLNNFA
MQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGMLTPVAELDPLEIGGVVVSR
ATLHNFQDIARKDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVKFDTPVFCPSCNSKL
RYVSEDIIIRCDNGLNCPAQNYERICHFVSKNAMDIAGLGRKQVAFLIDKRLISNPLDIF
FLKKKNETNLIRLENMDGWGKKSVANLWQNIEKSQKISLQRFIYALGIRHIGEQNAKLLA
REFVSYNNFIAQMELLSKNDSDVYQKLNDLEGIGDKMLVDIIDFFYVKENIQLIKKLGAV
LNIEDYKETREQNILTGKILVFTGSLKTISRVEAKEIAEKLGAKVASSVSSNTDLLIVGV
NGGSKLKKAKELNIKIIDEAEWLAFIKCLEKEV
NT seq 2082 nt   +upstreamnt  +downstreamnt
atgcaaaatattgatttaatatctgaaaaagaagctaaaaaattattagaagaactcgct
gataaaatagcgatgtataatcatgcttattatatagaagataatccgttagtctcagat
tcggagtatgatcagctatttaatctcaatcttaaattagagaatacatttcctcattta
gttttaagcaatagtcctagcaagaaaataggggcgaaaatcacaaataaatttgctaaa
gttatacatcaagcacctatgctatctcttagcaatgcttttgatgaagaggatataaga
gattttttagaacgtataaaaaattttttacgcattaatgagtttactcctatattttgt
gaacctaaaatagatggtttgtctttttctgctatttataagcatgggttgtttataact
ggagcaacaagaggtgatggatatgttggtgaagatataacgattaatatcaaaacaata
aaaaatttcccgcataaaatagataatgctcctgagtttttagaagtacgcggtgaaatt
tatattgagaaacaagattttgttaatctcaataaagaacaagaagcgcagaacagaggg
aaatttgctaatcctcgtaatgctgcagcagggtctattcgtcaacttgatgttgctatt
acagctcaaagaccgctaaaatattttatatattcaggtggggtaactgagaagaatctt
gcgtctacacaagagcaattacttgcaaaattgaaggcgttaagttttagcgttaacgaa
atatctaaacttgcaagctctgaagaagaaatttttgctttttatgaatatctcaaaaca
aataggcataatttaccttatgaaattgatggggtagtatataagctcaataattttgca
atgcaaaatagaatgggatttattgcacgatctccacgttttgctattgctcataaattt
cctgctataataggacaaacaaagctgctttccattacggtgcaagttggtagaacaggt
atgttaacgcctgtagcagaacttgaccctctagaaataggtggggtcgttgttagtaga
gcaacactacataactttcaagatattgcacgaaaagatgtgcgtattaaagattatgta
tttttgcaacgtgctggtgatgttattcctcaaatcacaggcgttgatataagcaaacgt
tcgaatgatactgtaaagtttgatactcctgtattttgtccatcatgtaattctaaattg
cgttatgtgtctgaagatattattatacgctgtgataacggtcttaactgtcctgctcag
aattatgagcgtatctgtcattttgtatcaaagaatgccatggatattgcaggacttgga
cgtaagcaagtcgcatttttaatagataagaggttaattagtaatccacttgatattttc
tttttaaaaaagaaaaatgaaacaaacttaattagactagagaatatggatggctggggt
aagaaatcagtagcaaatctttggcaaaatatagaaaaatcacaaaaaattagcttgcaa
cggttcatatatgctctaggtattaggcatatcggtgaacaaaacgcaaaattacttgct
agagaatttgtgagctataataattttatagctcaaatggaattgctgagcaaaaacgat
tctgatgtttatcaaaagctaaatgatttagaagggatcggtgataagatgctagtagat
attattgattttttttacgttaaagaaaatatacaacttatcaaaaaacttggtgcagta
ttaaatatcgaagattataaagagactagagaacaaaatattttaacaggtaagatatta
gtatttactggtagtttaaaaacgatatctagagtcgaagctaaagaaatagctgaaaag
cttggtgctaaagttgcatctagcgtatcatcaaacacggatttattaatagtaggtgtg
aacgggggaagtaagcttaaaaaagctaaggagcttaatattaaaattattgatgaagca
gaatggcttgcattcataaaatgcttagaaaaagaagtttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (26)   

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