KEGG   Rathayibacter toxicus WAC3373: APU90_03845
Entry
APU90_03845       CDS       T04269                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
rtc  Rathayibacter toxicus WAC3373
Pathway
rtc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rtc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    APU90_03845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rtc03021]
    APU90_03845
   03400 DNA repair and recombination proteins [BR:rtc03400]
    APU90_03845
Enzymes [BR:rtc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     APU90_03845
Transcription machinery [BR:rtc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     APU90_03845
DNA repair and recombination proteins [BR:rtc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      APU90_03845
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: ALS57006
UniProt: A0A0C5BG23
Position
complement(827257..830748)
AA seq 1163 aa
MAAAPIATTTSPKNGRAASRLSFAKISDTLTVPDLLALQTESFDWLVGSEAWKTRVAEAQ
AAGRQDLPSGSGLDEIFEEISPIEDLSETMQLSFTNPYLEPEKYTIEEAKERGKTYAAPL
YVEAEFMNHLTGEIKTQTVFMGDFPLMTEKGTFIINGTERVVVSQLVRSPGVYFERQQEK
TSDKDVYSARVIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSEEILEQFA
GYESIELTLEKDNILTKEDALRDIYRKLRPGEQVAAEAARALLDNFYFNSKRYDLAKVGR
YKINRKLGIDKALSDSVLTLEDIIATIKYLVALHDGRTTLPGVRDGEPVELRLDVDDIDH
FGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFG
TSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGP
NIGLIGSLASFARINSFGFIETPYRKVIEGRVTEQIKYLTASEEDEFLVAQANAPLTADM
HFAEDKVLVRPKGGEVELVDAKRVDYMDVSPRQMVSVATSLIPFLEHDDANRALMGANMQ
RQAVPLLRSESPVVGTGMEGFAAIDAGDVVTAEKAGVVQEVSADVVTVQLDEGGTQTYFL
RKFDRSNQGTSYNNRVVVSAGDRVEVGEVVADGPATENGELALGKNLLVAFMPWEGHNFE
DAIILSQNLVKDDVLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPELLADLDERGIIRI
GAEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEQGTIIGVKV
FDAQDGDDELGSGVNQRVVVYIAQKRKITEGDKLAGRHGNKGVISKILPVEDMPFLADGT
PVDIVLNPLGVPGRMNFGQVLEIHLGWIAKQGWKVQSQPEWAVRLPEHAREAAPGTKVAT
PVFDGAAEEELAGLLDSTIPTRDGERLIGSSGKTQLFDGRSGEPFPDPVSVGYMYILKLH
HLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSD
DILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADGTAVSLRDTDDEV
YRAAEELGINISSRFESSSVDDI
NT seq 3492 nt   +upstreamnt  +downstreamnt
ttggctgctgcgcccatcgcaaccaccacctcgcccaagaacggacgcgccgcatcgcgt
ctctcgttcgccaagatcagcgacacgctgaccgttcccgatttgctcgcgttgcaaacg
gagagcttcgactggctcgtcggttcggaggcgtggaagactcgtgtcgccgaggcacag
gccgccggccgccaggatctcccctctggttctggtctggatgagatcttcgaagagatt
tccccgatcgaggatctcagcgagacgatgcagctgagcttcacgaatccttacctcgag
cccgagaaatacaccatcgaagaggctaaggagcgcggcaagacatatgccgctccgctc
tacgtcgaagccgagttcatgaaccacctcaccggtgagatcaaaactcaaaccgttttt
atgggcgacttcccgctgatgacagagaagggcaccttcatcatcaacggcaccgagcgt
gtcgtcgtatcgcagctggtccgcagcccgggcgtctacttcgagcgccagcaggagaag
acctccgacaaggacgtctactccgcccgcgtcatcccgagccgcggcgcctggctcgag
ttcgagatcgacaagcgcgatcaggtcggcgtgcgcatcgaccgcaagcgcaagcagtcg
gtcaccgtcttcctcaaggctctcggcctgaccagcgaagagattctcgagcagttcgct
ggctacgagtcgatcgagctcactctcgagaaggacaacattctcaccaaggaggacgcg
cttcgcgatatctaccgcaagcttcgtccgggtgagcaggtcgcggcggaggcagcccgt
gccttgctggacaacttttacttcaactccaagcgctacgacctcgccaaggtcggtcgc
tacaagatcaaccgcaagctcggcatcgacaaggcgctgtccgactccgtgctcaccctt
gaggacatcatcgcgacgatcaaatacctggtcgcgctgcacgacggccgcaccaccctt
ccgggcgtgcgcgacggcgagccggtcgagctgcgcctcgacgtggacgacatcgaccac
ttcggaaaccgccgcattcgcgcggtcggcgagctgatccaaaaccaggtccgcaccggt
ctgtcccggatggagcgcgtggtccgcgaacgcatgaccacgcaggacatcgaggcgatc
actccgcaaaccctgatcaacgtgcgcccggtcgtggccgcgatcaaggagtttttcggc
accagccagctctcgcagttcatggaccagaacaacccgctcgcgggcttgactcacaag
cgccgcctgtcggcgctgggcccggggggtctgtcccgtgagcgcgccggcgtcgaggtc
cgcgacgttcacccctcgcactacggccggatgtgcccgatcgagaccccggaaggtccg
aacatcggcctgatcggatcattggcctccttcgcgcgcatcaattcctttggcttcatc
gagaccccgtaccgcaaggtcattgagggtcgagtgacggagcagattaagtacctcacc
gcctccgaagaagacgaattcctggttgcccaggcaaacgctccgctgactgccgatatg
cacttcgcggaagacaaggtcctggtgcggcccaagggcggcgaggtcgaactcgttgac
gccaaacgggtggactacatggatgtctccccacgccagatggtgtcggtcgcgacctcg
ctcatcccgttcctcgagcacgacgatgcgaaccgtgcgctgatgggcgccaacatgcag
cgtcaggctgtgccgctcctccgcagcgagtcgcccgtggtggggaccggcatggagggc
ttcgcggccatcgacgctggtgacgtcgtcaccgccgagaaggcaggtgtcgtgcaggag
gtgtccgccgacgtggtcaccgtccagctcgatgagggcggtacgcagacctacttcctc
cgcaagttcgatcgttccaaccagggcacgtcgtacaacaatcgtgtggtcgtctcggcc
ggtgatcgcgtcgaggtcggtgaggtcgtcgctgacggcccggcgaccgagaacggcgaa
ctcgcgctgggtaaaaacttgctggttgccttcatgccgtgggaaggtcacaacttcgag
gacgcgatcatcctcagccagaacctcgtgaaggacgacgtcctctcctcgattcacatc
gaggaatacgaggttgacgcccgagacaccaagctcggcaaggaggagatcactcgcgat
ctgcccaacgtcagcccggagcttctggccgacctggatgagcgtggcatcatccggatc
ggtgccgaggtccgccccggcgacattctcgtcggcaaggtcaccccgaagggcgagact
gaactctcggccgaggagcgtctgctccgtgcgatcttcaacgagaagagccgcgaagtc
cgcgacacctcgctcaaggtgccccacggcgagcagggcacgatcatcggcgtcaaggtg
ttcgatgcgcaggacggcgacgacgagctcggctcgggcgtcaaccagcgcgtggtcgtc
tacatcgcccagaagcgcaagatcacggagggcgacaagctcgccggccgccacggcaac
aagggcgtcatctcgaagatcctgccggtcgaggacatgccgttcctcgccgacggcacc
ccggttgatatcgtcctcaacccgctcggcgttcccggccggatgaacttcggccaggtc
ctcgagatccacctcggctggatcgcgaagcagggctggaaggtccagagccagccggag
tgggcggtacgcctaccggagcatgcccgcgaggcagcgcccggcaccaaggttgcgacc
ccagtgttcgacggtgcggcggaggaggagctcgccgggctcctggactccacgatccca
acgcgcgacggcgagcgcttgatcgggtcctccggtaagacgcagctgtttgacggccgt
tccggggagcccttccccgacccggtctcggtgggctacatgtacatcctgaaactgcat
cacctcgttgacgacaagatccacgcgcgttcgacgggaccgtactcgatgattacccag
cagccgctcggcggtaaagcgcagttcggtggtcagcgtttcggtgagatggaggtgtgg
gctctcgaggcctatggtgccgcttacgcacttcaggagctgctgaccattaagtcggac
gacatcctcggccgcgtcaaggtgtacgaggccattgtcaagggtgagaacatccaggag
ccgggcattcccgagtccttcaaggtgctcatcaaagagatgcagtcgctctgcttgaac
gtcgaggtgctctcggctgacggcaccgcggtcagcttgcgtgacacggatgacgaggtc
taccgtgccgcggaggagctcggcatcaacatctcctcgcgcttcgagtcgtcctccgtc
gacgacatctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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