KEGG   Rathayibacter toxicus WAC3373: APU90_09080
Entry
APU90_09080       CDS       T04269                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
rtc  Rathayibacter toxicus WAC3373
Pathway
rtc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rtc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    APU90_09080
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rtc03021]
    APU90_09080
   03019 Messenger RNA biogenesis [BR:rtc03019]
    APU90_09080
Transcription machinery [BR:rtc03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     APU90_09080
Messenger RNA biogenesis [BR:rtc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     APU90_09080
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind Rho_N AAA_25 Spore_III_AA AAA_22 VWA_2 NACHT
Other DBs
NCBI-ProteinID: ALS57896
Position
1989109..1991325
AA seq 738 aa
MTDLNTRDSTVDPSVDLSTLRVAELQSLATRLGLGGASKLRKGELVRAISRLRTAAPVVQ
PEDGAAGEAGAQNPEDNPDDAPAQAALATVAESVDRTDTNEPAEEALPSESTDAEPAQIL
EQGAASVEDHAVSTSAELEFPVDGNSTADAAERAPRRRSSRRVSSGTVAAGEHLNIPGGT
GVESLIPDLPVVEHHVDTELASQPIIDIELPPAPGLDDSSREAGQRDRRGRRRGRAGQDE
QKEQQADETTTVTAEASDSGEQQGDQQQGTGRGRNRRNRNRNRSEDRNNDSASFGNGAQN
GGGSHNGSAQNGNSQQQPPQQAEAEDGRRSRYRDRKRRGGVGGDDIEIGEDDVLIPVAGI
LDVLDNYAFVRTTGYLSGVSDVYVSLGQVKKYNLRKGDAVVGAIRQPREGEGGGRQKYNA
IVKVDSINGQTLEEAADRVEFQKLTPLYPTERLRLETEPGKLAQRIVDLVAPIGKGQRGL
IVAPPKAGKTIVLQQIANAIVQNNPEVHLMVVLVDERPEEVTDMQRTVRGEVVASTFDRP
AEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNVTAPASGRILSGGVDASALY
PPKKFFGAARNIENGGSLTILATALIETGSKMDEVIFEEFKGTGNMELRLSRHLADKRIF
PAVDVNSFGTRREEMLLNADEVKITWKLRRALAGLDQQQALEIILSRLKETSSNVEFLMQ
VSRSAVGPTAVSHSNGHH
NT seq 2217 nt   +upstreamnt  +downstreamnt
gtgacagatctcaatacccgcgattcgaccgtagaccccagcgttgatctctcgactctg
cgtgttgcggagttgcagtcgctcgcaacaagacttggcctcggcggtgcttccaaactg
cgcaagggtgagttggtgcgggcgatctcacgactgcgtacggcagcaccagtcgtccag
ccggaggatggtgctgccggtgaggctggcgcgcagaaccccgaggacaacccagatgac
gcacctgcgcaggcggcactcgctactgttgcggaaagcgttgatcgtaccgacactaac
gagcccgctgaggaagcactgcctagcgagagcaccgatgccgagccagctcagatactc
gagcagggagccgcctccgtcgaggatcacgccgtgtctacttccgccgaactcgagttt
cccgtcgacggcaactcaacagccgacgctgccgagcgtgcaccgcgccgccgtagctcg
cgtcgtgtttccagcggcacggtagctgcgggtgagcacctcaatattcctggcggcaca
ggggtggaatcgctcattcctgatcttcctgttgtcgagcatcacgtcgacaccgaactg
gcatcacagcccatcattgacatcgagttacctcccgctccggggctggatgactcctct
cgcgaggctggtcagcgtgaccgacggggtcgtcgccgcggacgcgccggtcaggacgag
cagaaggagcaacaggctgacgagacaaccacggtgaccgccgaggcctctgactccggt
gagcagcagggtgaccagcagcagggcaccggtcgtggccgcaatcgtcgtaaccggaac
cgtaaccgtagcgaggatcggaacaatgactccgcttcattcggcaacggagcgcaaaac
gggggtggaagccacaacggcagcgcgcagaacggaaatagtcaacagcagcctcctcag
caggcagaggctgaggacgggcgtcgaagccgttatcgtgaccgcaagcgccgcggggga
gttggcggcgacgatatagagatcggcgaggacgacgttctcatcccggttgccggcatc
ctcgacgtgcttgacaactatgccttcgtgcggaccacgggttacttatcgggtgtgagc
gacgtctacgtctcactcggccaggtcaagaagtacaacctgcgtaagggcgatgcggtt
gtcggtgcgattcgccagcctcgcgagggcgagggcggaggtcgccagaaatataacgcg
atcgtcaaggtcgattccatcaacggccagactctcgaagaggccgccgatcgcgtcgag
tttcagaagctcactcctctgtaccccaccgagcgcctccgcctcgagactgagccgggc
aagctagcgcagcgcatcgttgacctggtcgctccgatcggcaagggtcagcgcggcctt
atcgttgcgccccccaaggccggcaagacgatcgtgttgcagcagatcgccaatgcgatc
gtgcagaacaatcctgaggtgcatctcatggtcgttctggtcgatgaacggccggaggag
gtcacggacatgcagcgcaccgtccgcggtgaggttgttgcctccacgttcgatcgccca
gccgaagaccacaccaccgttgctgagctggcgattgagcgtgccaagcgtttggtggag
ctgggccacgacgtggtcgtgctgcttgactccatcactcgcctcggtcgtgcctacaac
gtgaccgccccggcgtctggccgcatactctccggcggcgtagatgcctcggcgctctac
ccaccgaagaagttcttcggtgccgcgcgcaatatcgaaaacggtggttcgctgactatt
ctcgccacggcgctcatcgagaccggttccaaaatggatgaggtgatctttgaggagttc
aagggcaccggcaatatggagcttcgcctctcgcgtcacctcgctgacaagcggattttc
cccgccgttgacgttaactctttcggcacccgccgcgaagagatgttgctcaatgccgac
gaggtaaagatcacctggaagctgcgtcgagcgcttgcgggactcgaccagcagcaggcg
ctggagatcatcctgtcgcgcctgaaggagacgtcgtcaaatgtggagtttctgatgcag
gtgtcgagatcggctgtcggccccaccgctgtctcccacagtaacggccaccactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

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