KEGG   Rathayibacter tanaceti: GSU10_01235
Entry
GSU10_01235       CDS       T06377                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rte  Rathayibacter tanaceti
Pathway
rte03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rte00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GSU10_01235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rte03400]
    GSU10_01235
Enzymes [BR:rte01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GSU10_01235
DNA repair and recombination proteins [BR:rte03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GSU10_01235
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: QHC54420
Position
complement(273478..275991)
AA seq 837 aa
MASSQQLVTVAGRRLRLTHLDKLVYPEAGYTKADVLGYYASVASAMLPHVARRPVTRKRW
VDGVGTAEQPGEVFFEKNLPSSAPHWLSRTRLTHASRDIEYPLVDDVAGLTWLAQQASLE
LHVPQWRVGSAGERRPPDRLVLDLDPGEGAGLAECAEVAFLARDLLEGMGLAPLPVTSGS
KGIHLYCALGASATSEQISTVAHELARALESDHRDLVVSDMKRTLREGKVLVDWSQNAAA
KTTIAPYSLRGRLLPAAAAPRSWEELGAAGLRQLAPDEVIERLRSDGDLLQPLLAARGAG
VEPTPERMAGFAATEASADRLAAYRSMRDAARTPEPVPEPGSGTTASGDTFVIQEHHARR
LHYDFRLEHDGVLVSWAVPKGPPLEGDPNRLAVQTEDHPLEYATFEGTIPAGEYGGGEVR
IWDEGSYALEKWREGEEVIAVLSGRADGGLGGEPRRYALLHTGSKAGAEKNWLLHLMAPG
AAHGEGTKRRGRAGGAAASAASRPAPSASTPGDGETPRRHRPMLATAGRRTDVDPDAAIE
MKWDGYRALVRVQGGAVTLTSRNGNDLTAVFPDVLGPLAAASADAVLDGEIVALDARGRP
DFGALQTRGGLSAPREIEAAARTTPVHVMLFDLLERAGEDVTARDYDSRRAALVELVAEN
ERVHLPSVFDGDLEEAMATSHSLGLEGVVAKRHDSPYREGSRSRDWIKLTHHRLQEVVIV
GWREGKGGLQGSVGALLTAIPCDDGLVYSGRVGTGFSDRERRSLVDRLAEHASDEPAVSV
PPAESRGVHWVSPVLVGEVRYRERTSAGTLRQPVWRGWRADKAASEVRVEGPGAEGS
NT seq 2514 nt   +upstreamnt  +downstreamnt
atggcatcgtcacagcagctcgtcaccgtggcgggacggcgcctccgactgacccacctc
gacaagctcgtgtacccggaggcggggtacaccaaggccgacgtgctcggctattacgcc
tccgtcgcctccgcgatgctgccgcacgtggcacgtcggccggtcacccgcaaacgctgg
gtcgacggagtcggaacggccgagcagccgggcgaggtcttcttcgagaagaacctcccc
tcctccgccccgcactggctgagccgcacccggctcacacacgcctcgcgcgacatcgag
tacccgctcgtcgacgacgtcgccgggctgacctggctcgcgcagcaggcgtcgctcgaa
ctgcacgtgccgcagtggcgcgtcggatcggccggcgaacgccgcccaccggaccgcctc
gtgctcgatctcgaccccggcgagggcgccggtctcgcggagtgcgccgaagtggcgttc
ctggcgcgcgacctgctcgaggggatggggctggcgccgctgcccgtcaccagcggcagc
aagggcatccacctctactgcgcgctcggcgcctccgccaccagcgagcagatctcgacc
gtcgcccacgagctggcgcgggctctcgaatccgaccaccgcgacctcgtcgtctcggac
atgaagagaaccctgcgcgagggcaaagtcctggtcgactggagccagaacgcggccgcg
aagacgacgatcgcgccgtactcgctgcggggacgcctcctgcccgccgctgccgcaccc
cgcagctgggaggaactgggcgctgcgggcctgcgccagctcgcaccggacgaggtgatc
gagcggctcaggagcgacggcgacctgctccagccgctgctcgcggctcgcggcgccggg
gtggaaccgactccggagcggatggcgggcttcgccgcgaccgaggcctccgccgaccgg
ctcgccgcctaccgcagcatgcgcgacgccgcccgaaccccggagcccgtacccgagccc
gggtccggcaccaccgcctcgggcgacaccttcgtgatccaggagcaccacgcccgacgc
ctgcactacgacttccgcctcgagcacgacggcgtgctcgtcagctgggccgtgcccaag
ggcccgccgctggagggcgacccgaaccggctcgccgtgcagacagaggaccacccgctc
gagtacgcgaccttcgagggcaccatcccggccggcgagtacggcggcggcgaggtccgc
atctgggacgagggcagctacgcgctcgagaagtggcgggagggcgaggaggtgatcgcc
gtgctcagcgggcgcgcagacggcggtctcggcggcgagccccgccgctacgccctgctg
cacaccgggtcgaaggcgggagccgagaagaactggctgctgcacctcatggcgcccggg
gcggcgcacggggaggggacgaagcgacggggccgggcgggcggggccgccgcgtccgcc
gcctcccggcccgcaccctccgcctcgaccccgggcgacggcgagacgccgcgacgccac
cgccccatgctcgcgacggccggacgccgcaccgacgtcgatccggacgccgccatcgag
atgaagtgggacggctaccgggccctcgtacgcgtgcagggcggcgcggtgaccctgacc
agccgcaacggcaacgacctgaccgcggtgttcccggacgtgctcgggcccctggccgcg
gcctctgccgatgccgtgctcgacggcgagatcgtcgccctcgacgcacgcgggcgcccc
gacttcggcgccctgcagacccgcggcgggctgagcgcgccgcgcgagatcgaggcggcg
gcccggacgactcccgtgcacgtgatgctgttcgatctgctcgagcgcgccggcgaggac
gtcaccgcccgcgactacgattcccgccgtgccgccctcgtcgagctcgtcgccgagaac
gagcgcgtgcacctcccgtcggtgttcgacggcgatctggaggaggcgatggcgaccagc
cacagcctggggttggagggcgtggtcgccaagcgccacgactccccctaccgggagggc
agccgctcccgcgattggatcaagctcacccaccaccggctccaggaggtggtgatcgtg
ggctggagggagggcaagggcgggctgcagggctcggtcggcgcgctgctgaccgcgatc
ccctgcgatgacgggctggtgtactccggccgggtcggcaccggtttcagcgaccgcgag
cgccgcagcctcgtcgaccgcctggctgagcacgcgagcgacgagccggccgtctcggtg
cctccggccgagtcgcgcggggtgcactgggtgtcgccggtgctggtcggcgaggtccgc
taccgcgagcgcacctctgccggcacgctgcggcagccggtgtggcgcggttggcgagcg
gacaaggctgcgagcgaggtgcgggtggaggggccgggcgcggaggggagctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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