KEGG T04099: DC20

Rufibacter tibetensis: DC20_20525

Entry

DC20_20525        CDS       T04099

Symbol

gyrB

Name

(GenBank) DNA gyrase subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

rti Rufibacter tibetensis

Brite

KEGG Orthology (KO) [BR:rti00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rti03032]
    DC20_20525 (gyrB)
   03400 DNA repair and recombination proteins [BR:rti03400]
    DC20_20525 (gyrB)
Enzymes [BR:rti01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     DC20_20525 (gyrB)
DNA replication proteins [BR:rti03032]
Prokaryotic type
  DNA Topoisomerases
   DC20_20525 (gyrB)
DNA repair and recombination proteins [BR:rti03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      DC20_20525 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3 GyrB_hook Toprim_4

Other DBs

NCBI-ProteinID:

ALJ00939

UniProt:

A0A0P0C6P5

Position

complement(4954683..4956638)

AA seq 651 aa
MSDIEQNNMTAYSADSIQVLEGLEAVRKRPAMYIGDIGIKGLHHLVWEVVDNSIDEALAG
HCDEISVTIHTDNSISVSDNGRGIPVDFHQKEGRSALEVVMTVLHAGGKFDKDSYKVSGG
LHGVGVSCVNALSTDLHVTVHRNGKLYEQHYNIGIPAYPVREIGTTDKRGTTVHFQPDAS
IFTVTEYKYETVASRLRELAFLNKGIRINLTDLREEVSPGEYLSESFYSQGGLREFVAYI
EETRVNLIPEPIYVESEKGGIPVEIALNYNTSYTENIFSYVNNINTHEGGTHVAGFRRAL
TRTLKSYAEKSGMLEKAKVEIQGDDFREGLTAVISVKVQEPQFEGQTKTKLGNSDVMGAV
DTVVGEILNRFLEENPKEARIIIQKVILAAQARLAARKAREMVQRKNVMGGSGLPGKLAD
CSDSDPENCELYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKAQEHRIYENEEIKN
MITALGVSFGTPEDEKALNMVKLRYHKVIIMTDADVDGSHIRTLILTFFFRYMRDLIDNG
YVYIALPPLYLVKKGKEERYCWTEQDRIEAIAELGKGKEDSVGVQRYKGLGEMNPEQLWE
TTMRPDTRSLKQVSVESAAEADHLFSMLMGDEVAPRRDFIERNAKYAKVDV

NT seq 1956 nt +upstreamnt +downstreamnt
atgagtgacatcgaacaaaacaacatgaccgcctattccgcagacagtatccaggtgcta
gaaggcttggaggcggtgcgtaaacggcccgccatgtacatcggcgatattggcatcaaa
ggtctccatcacctggtttgggaggtggtagacaactccatagatgaagcgcttgccggg
cattgtgacgaaatcagcgttaccattcacacagacaactccatttcagtttcagacaat
ggccggggtattccggttgacttccaccagaaggaaggtcgttctgccctggaagtagta
atgactgtgcttcacgccgggggtaagtttgacaaagattcttacaaagtttctggtggt
ttgcacggggtaggggtttcctgcgtgaacgcgctttccacagacctgcatgtgacggtt
caccgcaatggtaagttgtacgagcagcattataatattggtataccagcttaccctgtg
cgcgaaattggcactacagacaagagaggtaccaccgtacacttccaacctgatgccagc
atcttcaccgttacagagtataaatacgagacggtagccagccgcttgcgtgaactggct
ttcctgaacaaaggcatcagaatcaaccttactgacctgagagaagaagtatcgccaggt
gaatacctgagcgagtctttctactcacaaggtggtctgcgtgagtttgtggcctatatt
gaggaaaccagggttaacctgatcccggagcctatctacgtggagagtgaaaaaggtggt
attccggtggaaattgccttgaactacaacacgtcttacacagagaatatcttctcttac
gtaaacaacatcaacacccacgaagggggtacccacgtggccggtttccgtcgtgcgcta
acccgtaccctgaaaagctacgctgagaaatctgggatgctggagaaagctaaagtggag
attcagggcgatgacttccgcgagggcttgactgctgtgatttctgtaaaagtacaggaa
cctcagtttgaaggccagaccaaaaccaagttgggtaactcagacgtgatgggtgccgtg
gacacggtggtaggagagatcttgaaccgtttcctggaagagaacccgaaagaagcccgt
atcatcatccagaaagtaattcttgcggcgcaagcgcgcctggcggcccgtaaggcccgt
gagatggtgcagcgtaagaacgtgatgggtggctcgggcttaccaggtaaactggctgac
tgctctgactctgatcctgagaactgcgaactgtatctggtagagggtgactctgcaggt
ggttcagccaagcagggccgtgaccgtaagttccaggccattctgccgttgcgtggtaaa
atcctgaacgtggagaaagctcaggagcaccgcatctatgagaacgaagagatcaagaac
atgatcaccgccctaggcgtaagcttcgggactccggaagacgagaaggcactcaacatg
gtgaaactgcgctaccacaaagtcattatcatgacggatgcggacgtggacggttcccac
atcagaaccctgatcctgacgttcttcttccgctatatgcgtgaccttattgacaatggc
tacgtgtacattgcattaccgccgttgtacttggtgaagaaaggcaaagaagagcgttac
tgctggactgagcaggatcgcattgaagccattgccgaactagggaaaggaaaagaagat
agtgtgggcgtgcagcggtacaaaggtcttggtgagatgaacccagagcaactttgggaa
accaccatgcgcccagatacccgcagcttaaaacaagtttcagttgaatcagcagccgaa
gctgatcaccttttctctatgctaatgggagatgaagtagcgccccgcagagattttatt
gagcgcaatgcgaaatacgctaaagtagacgtttga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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