KEGG   Ruminococcus torques: RTO_17250
Entry
RTO_17250         CDS       T02606                                 
Name
(GenBank) Superfamily I DNA and RNA helicases
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
rto  Ruminococcus torques
Pathway
rto03420  Nucleotide excision repair
rto03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rto00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    RTO_17250
   03430 Mismatch repair
    RTO_17250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rto03400]
    RTO_17250
Enzymes [BR:rto01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RTO_17250
DNA repair and recombination proteins [BR:rto03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RTO_17250
   MMR (mismatch excision repair)
    Other MMR factors
     RTO_17250
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 AAA_11 UvrD_C_2 Viral_helicase1 AAA_30 DEAD ResIII AAA_12 SpvD CRM1_repeat_2 AAA_14
Other DBs
NCBI-ProteinID: CBL26296
UniProt: D4M4Y4
Position
1800809..1802638
AA seq 609 aa
MGFNEAQTQAIQHTDGPCLVLAGPGSGKTLTIVNRVKYLIEKQKVRPEEILVVTFTRFAA
AEMKSRLCLVMGKRDLPVTVGTFHGIYYGILKWAYRMNQENILSETEKYQILRGVINKER
MEIFDEEDFIQDIAAEIGKVKNNRIPLEEFVSEKCSADAFRNIYRNYEQHRKELKKIDFD
DMLVLCYELFRARPDVLAQWQKKFRYVLIDEFQDINRIQYDVIRMLAQPENNLFVVGDDD
QAIYGFRGADSELMLGFGKDFPDAKQILLGMNYRSTANIVQNSLKLIENNVERYSKKLEA
NREGGSCLHIQEVKDPVEEAEYVLEEIQKCKENGIKEEEIAILFRVHTDARAVVEAMVER
KIPFQMKEHLPNIYEHFIAKDIMAYFRLATGARHRQDFLQIMNRPKRYLGRDSVAGAKAS
FEDMRKFYCDKDWMIDRIDQFEWDVKMLMKMAPYAAIQYIRKRIGYDDFLKEYAFTHQIN
RSDLNEVLAEIEEAAKAFSSVEEWFAHVEEYTETLKVKEKERNRPRPGVRLMTIHASKGL
EFKQVFLIAANEGRIPYQKAKTDKEIEEERRLFYVAMTRAKDFLKICYVKIKNGKEVAPS
RFVDELLKS
NT seq 1830 nt   +upstreamnt  +downstreamnt
atgggatttaatgaagcacagacgcaggcgatccagcacacagacggcccatgtcttgta
ctggcaggtccgggatcggggaagacgcttacgattgtaaacagagtaaaataccttata
gagaaacagaaagtaagaccagaagaaattctggtcgttacttttacaagatttgcagcg
gcggagatgaaatcccgcctctgtttggttatgggcaaaagagatcttccggttacagtg
ggtacatttcatggaatctattatggaatcctgaaatgggcttaccggatgaatcaggaa
aatattctgtcggagacagaaaaatatcagattttacgtggcgtgattaacaaggaaaga
atggagatctttgatgaagaagattttattcaggatattgcggcagaaattggaaaagtg
aagaataatcggattccgctggaagaatttgtatcagaaaagtgtagtgcggatgctttt
cgcaatatttaccgtaattatgaacagcatagaaaagaactgaaaaagattgattttgat
gatatgctggtactttgttatgaattgttccgggcaagaccagatgtacttgcacagtgg
cagaagaaattcagatacgttttgattgatgaatttcaggatattaatcgaattcagtat
gatgtgatccgcatgctggctcagccggaaaataatttgttcgtagtgggggatgatgat
caggcaatctacggatttcgtggagctgattcagaattgatgcttggatttggaaaagat
ttccctgatgcaaaacaaattctgttgggaatgaattaccgttcgacagcaaatatcgta
cagaattctttgaaactgattgaaaataatgtggagagatacagtaaaaaactggaagca
aaccgtgaaggcggttcctgccttcatattcaggaagtgaaagatccggtggaagaggcg
gaatatgttcttgaagagatacagaaatgtaaggagaatggcataaaagaagaggagatt
gcgattctgttcagggttcatacagatgcgagagcagtggtagaagcaatggtggagcgg
aagatcccgtttcagatgaaagaacatcttccaaatatatatgaacactttatcgcaaag
gacatcatggcatatttccgactggcaacaggagcccggcacagacaagattttttacag
ataatgaaccgaccaaagcgatatcttggaagagacagtgtagcaggagcgaaggcttct
tttgaagacatgcggaagttctattgtgataaagactggatgatcgaccggattgatcag
tttgagtgggatgttaagatgcttatgaagatggctccatatgcggcaatccagtatatc
agaaaaaggattggttatgacgattttctgaaagagtatgcatttacacatcagataaac
agatctgatctgaatgaagtactggcagagattgaagaggcggcgaaagcattttcaagt
gttgaagaatggtttgcacatgtagaagaatatacggagactttgaaagtgaaggaaaag
gaaagaaacagaccacgtccgggtgtccggctgatgacgatacatgcttctaaaggactg
gaattcaagcaggtatttctgattgcggcgaatgaaggaaggattccgtatcagaaggca
aagacagacaaggagatcgaagaagagagaagattattctatgtggcaatgacaagggca
aaagattttctgaagatctgttatgtgaaaataaaaaacgggaaagaagttgctccttcc
cgttttgtagacgaactattgaaaagctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (24)   

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